Analysis of interatomic Contacts of Structural Units in PDB entry:
5CVE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5CVE entry

There are 4 chains in PDB entry 5CVE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLY -7ARG 223
B
GLY -2ARG 223
D
PRO 2ALA 8
E
PRO 2GLY 6
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 5CVE. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
1 5Right-handed 310
Helix 2
AA2
A
8 22Right-handed alpha
Helix 3
AA3
A
26 31Right-handed alpha
Helix 4
AA4
A
34 36Right-handed 310
Helix 5
AA5
A
37 55Right-handed alpha
Helix 6
AA6
A
73 79Right-handed alpha
Helix 7
AA7
A
93 104Right-handed alpha
Helix 8
AA8
A
105 109Right-handed 310
Helix 9
AA9
A
118 122Right-handed 310
Helix 10
AB1
A
137 141Right-handed 310
Helix 11
AB2
A
142 156Right-handed alpha
Helix 12
AB3
A
187 197Right-handed alpha
Helix 13
AB4
B
1 5Right-handed 310
Helix 14
AB5
B
8 22Right-handed alpha
Helix 15
AB6
B
26 31Right-handed alpha
Helix 16
AB7
B
34 36Right-handed 310
Helix 17
AB8
B
37 54Right-handed alpha
Helix 18
AB9
B
73 79Right-handed alpha
Helix 19
AC1
B
93 104Right-handed alpha
Helix 20
AC2
B
105 109Right-handed 310
Helix 21
AC3
B
118 122Right-handed 310
Helix 22
AC4
B
137 141Right-handed 310
Helix 23
AC5
B
142 155Right-handed alpha
Helix 24
AC6
B
186 197Right-handed alpha
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There are 4 sheets in PDB entry 5CVE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
111 116first strand
Strand 2
A
86 91parallel
Strand 3
A
64 68parallel
Strand 4
A
129 135parallel
Strand 5
A
157 170parallel
Strand 6
A
182 186parallel
Strand 7
A
174 177anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
111 116first strand
Strand 2
A
86 91parallel
Strand 3
A
64 68parallel
Strand 4
A
129 135parallel
Strand 5
A
157 170parallel
Strand 6
A
216 223anti-parallel
Strand 7
A
200 206anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
111 116first strand
Strand 2
B
86 91parallel
Strand 3
B
64 68parallel
Strand 4
B
129 135parallel
Strand 5
B
157 169parallel
Strand 6
B
216 223anti-parallel
Strand 7
B
200 206anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
174 177first strand
Strand 2
B
182 185anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il