Analysis of interatomic Contacts of Structural Units in PDB entry:
5D0B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5D0B entry

There are 4 chains in PDB entry 5D0B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 2ALA 377
B
 ASN 2ALA 377
F
 G 27 U 33
F
 U 35 C 43
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 50 helices in PDB entry 5D0B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 17Right-handed alpha
Helix 2
AA2
A
30 43Right-handed alpha
Helix 3
AA3
A
53 59Right-handed alpha
Helix 4
AA4
A
59 64Right-handed alpha
Helix 5
AA5
A
98 101Right-handed 310
Helix 6
AA6
A
104 123Right-handed alpha
Helix 7
AA7
A
139 147Right-handed alpha
Helix 8
AA8
A
192 198Right-handed alpha
Helix 9
AA9
A
210 213Right-handed 310
Helix 10
AB1
A
214 219Right-handed alpha
Helix 11
AB2
A
226 230Right-handed 310
Helix 12
AB3
A
241 246Right-handed alpha
Helix 13
AB4
A
247 251Right-handed 310
Helix 14
AB5
A
258 262Right-handed 310
Helix 15
AB6
A
264 269Right-handed alpha
Helix 16
AB7
A
271 277Right-handed alpha
Helix 17
AB8
A
279 288Right-handed alpha
Helix 18
AB9
A
290 294Right-handed 310
Helix 19
AC1
A
297 312Right-handed alpha
Helix 20
AC2
A
313 315Right-handed 310
Helix 21
AC3
A
316 327Right-handed alpha
Helix 22
AC4
A
329 344Right-handed alpha
Helix 23
AC5
A
345 347Right-handed 310
Helix 24
AC6
A
348 359Right-handed alpha
Helix 25
AC7
A
361 377Right-handed alpha
Helix 26
AC8
B
3 17Right-handed alpha
Helix 27
AC9
B
30 43Right-handed alpha
Helix 28
AD1
B
53 59Right-handed alpha
Helix 29
AD2
B
59 64Right-handed alpha
Helix 30
AD3
B
98 101Right-handed 310
Helix 31
AD4
B
104 123Right-handed alpha
Helix 32
AD5
B
139 147Right-handed alpha
Helix 33
AD6
B
192 198Right-handed alpha
Helix 34
AD7
B
210 213Right-handed 310
Helix 35
AD8
B
214 219Right-handed alpha
Helix 36
AD9
B
226 230Right-handed 310
Helix 37
AE1
B
241 246Right-handed alpha
Helix 38
AE2
B
247 251Right-handed 310
Helix 39
AE3
B
258 262Right-handed 310
Helix 40
AE4
B
264 269Right-handed alpha
Helix 41
AE5
B
271 277Right-handed alpha
Helix 42
AE6
B
279 288Right-handed alpha
Helix 43
AE7
B
290 294Right-handed 310
Helix 44
AE8
B
297 312Right-handed alpha
Helix 45
AE9
B
313 315Right-handed 310
Helix 46
AF1
B
316 327Right-handed alpha
Helix 47
AF2
B
329 344Right-handed alpha
Helix 48
AF3
B
345 347Right-handed 310
Helix 49
AF4
B
348 359Right-handed alpha
Helix 50
AF5
B
361 377Right-handed alpha
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There are 6 sheets in PDB entry 5D0B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 25first strand
Strand 2
A
69 76anti-parallel
Strand 3
A
167 174anti-parallel
Strand 4
A
129 132anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 96first strand
Strand 2
A
236 238parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
151 152first strand
Strand 2
A
158 159anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
21 25first strand
Strand 2
B
69 76anti-parallel
Strand 3
B
167 174anti-parallel
Strand 4
B
129 132anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
95 96first strand
Strand 2
B
236 238parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
151 152first strand
Strand 2
B
158 159anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il