Analysis of interatomic Contacts of Structural Units in PDB entry:
5D3X


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5D3X entry

There are 2 chains in PDB entry 5D3X (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -2TYR 406
B
 GLY -2MET 401
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 5D3X. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
-2 255Right-handed alpha
Helix 2
AA2
A
264 269Right-handed alpha
Helix 3
AA3
A
347 351Right-handed 310
Helix 4
AA4
A
376 406Right-handed alpha
Helix 5
AA5
B
-1 256Right-handed alpha
Helix 6
AA6
B
264 269Right-handed alpha
Helix 7
AA7
B
347 351Right-handed 310
Helix 8
AA8
B
376 399Right-handed alpha
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There are 2 sheets in PDB entry 5D3X. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
257 258first strand
Strand 2
A
325 332parallel
Strand 3
A
297 303anti-parallel
Strand 4
A
285 294anti-parallel
Strand 5
A
272 282anti-parallel
Strand 6
A
368 373anti-parallel
Strand 7
A
358 363anti-parallel
Strand 8
A
336 340anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
257 258first strand
Strand 2
B
325 332parallel
Strand 3
B
297 302anti-parallel
Strand 4
B
285 294anti-parallel
Strand 5
B
272 282anti-parallel
Strand 6
B
368 373anti-parallel
Strand 7
B
358 363anti-parallel
Strand 8
B
336 340anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il