Analysis of interatomic Contacts of Structural Units in PDB entry:
5DGY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5DGY entry

There are 2 chains in PDB entry 5DGY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN -159	PRO 1361
B	MET 1	PHE 1119

There are 78 helices in PDB entry 5DGY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	-159	-150	Right-handed alpha
Helix 2	AA2	A	-123	-110	Right-handed alpha
Helix 3	AA3	A	-102	-80	Right-handed alpha
Helix 4	AA4	A	-77	-70	Right-handed alpha
Helix 5	AA5	A	-69	-55	Right-handed alpha
Helix 6	AA6	A	-55	-48	Right-handed alpha
Helix 7	AA7	A	-47	-38	Right-handed alpha
Helix 8	AA8	A	-35	-26	Right-handed alpha
Helix 9	AA9	A	-25	-19	Right-handed alpha
Helix 10	AB1	A	-19	-5	Right-handed alpha
Helix 11	AB2	A	-3	1	Right-handed 310
Helix 12	AB3	A	33	65	Right-handed alpha
Helix 13	AB4	A	70	89	Right-handed alpha
Helix 14	AB5	A	90	101	Right-handed alpha
Helix 15	AB6	A	105	141	Right-handed alpha
Helix 16	AB7	A	143	148	Right-handed alpha
Helix 17	AB8	A	149	169	Right-handed alpha
Helix 18	AB9	A	199	237	Right-handed alpha
Helix 19	AC1	A	240	278	Right-handed alpha
Helix 20	AC2	A	284	307	Right-handed alpha
Helix 21	AC3	A	310	322	Right-handed alpha
Helix 22	AC4	A	1070	1078	Right-handed alpha
Helix 23	AC5	A	1102	1112	Right-handed alpha
Helix 24	AC6	B	33	65	Right-handed alpha
Helix 25	AC7	B	70	89	Right-handed alpha
Helix 26	AC8	B	90	101	Right-handed alpha
Helix 27	AC9	B	105	141	Right-handed alpha
Helix 28	AD1	B	142	148	Right-handed alpha
Helix 29	AD2	B	149	169	Right-handed alpha
Helix 30	AD3	B	199	237	Right-handed alpha
Helix 31	AD4	B	240	278	Right-handed alpha
Helix 32	AD5	B	284	307	Right-handed alpha
Helix 33	AD6	B	310	322	Right-handed alpha
Helix 34	AD7	B	1072	1078	Right-handed alpha
Helix 35	AD8	B	1102	1112	Right-handed alpha
Helix 36	AD9	C	-158	-150	Right-handed alpha
Helix 37	AE1	C	-102	-80	Right-handed alpha
Helix 38	AE2	C	-77	-70	Right-handed alpha
Helix 39	AE3	C	-69	-55	Right-handed alpha
Helix 40	AE4	C	-55	-48	Right-handed alpha
Helix 41	AE5	C	-46	-38	Right-handed alpha
Helix 42	AE6	C	-35	-26	Right-handed alpha
Helix 43	AE7	C	-25	-19	Right-handed alpha
Helix 44	AE8	C	-19	-5	Right-handed alpha
Helix 45	AE9	C	33	65	Right-handed alpha
Helix 46	AF1	C	70	89	Right-handed alpha
Helix 47	AF2	C	90	101	Right-handed alpha
Helix 48	AF3	C	105	141	Right-handed alpha
Helix 49	AF4	C	143	148	Right-handed alpha
Helix 50	AF5	C	149	169	Right-handed alpha
Helix 51	AF6	C	199	237	Right-handed alpha
Helix 52	AF7	C	240	278	Right-handed alpha
Helix 53	AF8	C	284	307	Right-handed alpha
Helix 54	AF9	C	310	322	Right-handed alpha
Helix 55	AG1	C	1070	1078	Right-handed alpha
Helix 56	AG2	C	1102	1112	Right-handed alpha
Helix 57	AG3	D	-158	-150	Right-handed alpha
Helix 58	AG4	D	-123	-110	Right-handed alpha
Helix 59	AG5	D	-102	-80	Right-handed alpha
Helix 60	AG6	D	-77	-70	Right-handed alpha
Helix 61	AG7	D	-69	-55	Right-handed alpha
Helix 62	AG8	D	-55	-48	Right-handed alpha
Helix 63	AG9	D	-46	-38	Right-handed alpha
Helix 64	AH1	D	-35	-26	Right-handed alpha
Helix 65	AH2	D	-25	-19	Right-handed alpha
Helix 66	AH3	D	-19	-5	Right-handed alpha
Helix 67	AH4	D	33	65	Right-handed alpha
Helix 68	AH5	D	70	89	Right-handed alpha
Helix 69	AH6	D	90	101	Right-handed alpha
Helix 70	AH7	D	105	141	Right-handed alpha
Helix 71	AH8	D	143	148	Right-handed alpha
Helix 72	AH9	D	149	169	Right-handed alpha
Helix 73	AI1	D	199	237	Right-handed alpha
Helix 74	AI2	D	240	278	Right-handed alpha
Helix 75	AI3	D	284	307	Right-handed alpha
Helix 76	AI4	D	310	322	Right-handed alpha
Helix 77	AI5	D	1072	1078	Right-handed alpha
Helix 78	AI6	D	1102	1112	Right-handed alpha

There are 34 sheets in PDB entry 5DGY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	-147	-142	first strand
Strand 2	A	-136	-133	anti-parallel
Strand 3	A	-130	-127	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	5	first strand
Strand 2	A	10	11	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	178	180	first strand
Strand 2	A	187	189	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1014	1017	first strand
Strand 2	A	1023	1027	anti-parallel
Strand 3	A	1042	1048	anti-parallel
Strand 4	A	1116	1121	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1031	1033	first strand
Strand 2	A	1171	1178	parallel
Strand 3	A	1144	1155	anti-parallel
Strand 4	A	1057	1068	anti-parallel
Strand 5	A	1085	1092	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1131	1134	first strand
Strand 2	A	1294	1297	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1192	1195	first strand
Strand 2	A	1204	1207	anti-parallel
Strand 3	A	1221	1229	anti-parallel
Strand 4	A	1273	1281	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1214	1216	first strand
Strand 2	A	1345	1357	parallel
Strand 3	A	1323	1337	anti-parallel
Strand 4	A	1234	1249	anti-parallel
Strand 5	A	1253	1254	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1214	1216	first strand
Strand 2	A	1345	1357	parallel
Strand 3	A	1323	1337	anti-parallel
Strand 4	A	1234	1249	anti-parallel
Strand 5	A	1259	1265	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	5	first strand
Strand 2	B	10	11	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	178	180	first strand
Strand 2	B	187	189	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1014	1017	first strand
Strand 2	B	1023	1027	anti-parallel
Strand 3	B	1042	1048	anti-parallel
Strand 4	B	1116	1121	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1031	1033	first strand
Strand 2	B	1171	1178	parallel
Strand 3	B	1144	1155	anti-parallel
Strand 4	B	1057	1068	anti-parallel
Strand 5	B	1085	1092	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1131	1134	first strand
Strand 2	B	1294	1297	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1192	1195	first strand
Strand 2	B	1204	1207	anti-parallel
Strand 3	B	1221	1229	anti-parallel
Strand 4	B	1273	1281	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1214	1216	first strand
Strand 2	B	1346	1357	parallel
Strand 3	B	1323	1337	anti-parallel
Strand 4	B	1234	1249	anti-parallel
Strand 5	B	1253	1254	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1214	1216	first strand
Strand 2	B	1346	1357	parallel
Strand 3	B	1323	1337	anti-parallel
Strand 4	B	1234	1249	anti-parallel
Strand 5	B	1259	1265	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	5	first strand
Strand 2	C	10	11	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	178	180	first strand
Strand 2	C	187	189	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1014	1017	first strand
Strand 2	C	1023	1027	anti-parallel
Strand 3	C	1042	1048	anti-parallel
Strand 4	C	1116	1121	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1031	1033	first strand
Strand 2	C	1171	1178	parallel
Strand 3	C	1144	1155	anti-parallel
Strand 4	C	1057	1068	anti-parallel
Strand 5	C	1085	1092	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1131	1133	first strand
Strand 2	C	1295	1297	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1192	1195	first strand
Strand 2	C	1204	1207	anti-parallel
Strand 3	C	1221	1229	anti-parallel
Strand 4	C	1273	1281	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1214	1216	first strand
Strand 2	C	1345	1357	parallel
Strand 3	C	1323	1337	anti-parallel
Strand 4	C	1234	1249	anti-parallel
Strand 5	C	1253	1254	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1214	1216	first strand
Strand 2	C	1345	1357	parallel
Strand 3	C	1323	1337	anti-parallel
Strand 4	C	1234	1249	anti-parallel
Strand 5	C	1259	1265	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	-147	-142	first strand
Strand 2	D	-136	-133	anti-parallel
Strand 3	D	-130	-127	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	5	first strand
Strand 2	D	10	11	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	178	180	first strand
Strand 2	D	187	189	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1014	1017	first strand
Strand 2	D	1023	1027	anti-parallel
Strand 3	D	1042	1048	anti-parallel
Strand 4	D	1116	1121	anti-parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1031	1033	first strand
Strand 2	D	1171	1178	parallel
Strand 3	D	1144	1155	anti-parallel
Strand 4	D	1057	1068	anti-parallel
Strand 5	D	1085	1092	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1131	1133	first strand
Strand 2	D	1295	1297	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1192	1195	first strand
Strand 2	D	1204	1207	anti-parallel
Strand 3	D	1221	1229	anti-parallel
Strand 4	D	1273	1281	anti-parallel

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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1214	1216	first strand
Strand 2	D	1345	1357	parallel
Strand 3	D	1323	1337	anti-parallel
Strand 4	D	1234	1249	anti-parallel
Strand 5	D	1253	1256	anti-parallel

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There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1214	1216	first strand
Strand 2	D	1345	1357	parallel
Strand 3	D	1323	1337	anti-parallel
Strand 4	D	1234	1249	anti-parallel
Strand 5	D	1259	1265	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5DGY

Analysis of interatomic Contacts of Structural Units in PDB entry:
5DGY