Analysis of interatomic Contacts of Structural Units in PDB entry:
5DKB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DKB entry

There are 4 chains in PDB entry 5DKB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 305ARG 548
B
 LEU 306ARG 548
C
 HIS 687ASP 696
D
 HIS 687ASP 696
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 5DKB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
311 323Right-handed alpha
Helix 2
AA2
A
338 364Right-handed alpha
Helix 3
AA3
A
371 395Right-handed alpha
Helix 4
AA4
A
413 418Right-handed 310
Helix 5
AA5
A
420 439Right-handed alpha
Helix 6
AA6
A
441 456Right-handed alpha
Helix 7
AA7
A
473 493Right-handed alpha
Helix 8
AA8
A
496 526Right-handed alpha
Helix 9
AA9
A
537 546Right-handed alpha
Helix 10
AB1
A
547 548Right-handed 310
Helix 11
AB2
B
306 310Right-handed 310
Helix 12
AB3
B
311 322Right-handed alpha
Helix 13
AB4
B
338 363Right-handed alpha
Helix 14
AB5
B
371 395Right-handed alpha
Helix 15
AB6
B
412 416Right-handed alpha
Helix 16
AB7
B
420 439Right-handed alpha
Helix 17
AB8
B
441 456Right-handed alpha
Helix 18
AB9
B
473 493Right-handed alpha
Helix 19
AC1
B
496 531Right-handed alpha
Helix 20
AC2
B
537 546Right-handed alpha
Helix 21
AC3
C
688 696Right-handed alpha
Helix 22
AC4
D
688 696Right-handed alpha
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There are 2 sheets in PDB entry 5DKB. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
401 405first strand
Strand 2
A
408 411anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
401 405first strand
Strand 2
B
408 411anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il