Analysis of interatomic Contacts of Structural Units in PDB entry:
5DKD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DKD entry

There are 2 chains in PDB entry 5DKD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 1457LYS 1566
B
 ASN 1457LYS 1566
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 5DKD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1457 1472Right-handed alpha
Helix 2
AA2
A
1482 1486Right-handed 310
Helix 3
AA3
A
1494 1501Right-handed alpha
Helix 4
AA4
A
1506 1516Right-handed alpha
Helix 5
AA5
A
1521 1540Right-handed alpha
Helix 6
AA6
A
1544 1566Right-handed alpha
Helix 7
AA7
B
1458 1472Right-handed alpha
Helix 8
AA8
B
1482 1486Right-handed 310
Helix 9
AA9
B
1494 1501Right-handed alpha
Helix 10
AB1
B
1506 1516Right-handed alpha
Helix 11
AB2
B
1521 1540Right-handed alpha
Helix 12
AB3
B
1544 1566Right-handed alpha
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There are no sheets in PDB entry 5DKD
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