Analysis of interatomic Contacts of Structural Units in PDB entry:
5DPT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DPT entry

There are 2 chains in PDB entry 5DPT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLU 0VAL 121
B
ASP 1GLY 123
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 5DPT. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
11 16Right-handed alpha
Helix 2
AA2
A
17 32Right-handed alpha
Helix 3
AA3
A
63 76Right-handed alpha
Helix 4
AA4
A
97 106Right-handed alpha
Helix 5
AA5
B
11 16Right-handed alpha
Helix 6
AA6
B
17 32Right-handed alpha
Helix 7
AA7
B
63 76Right-handed alpha
Helix 8
AA8
B
97 106Right-handed alpha
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There are 2 sheets in PDB entry 5DPT. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
4 5first strand
Strand 2
B
55 59parallel
Strand 3
B
35 42anti-parallel
Strand 4
B
112 117parallel
Strand 5
B
84 86anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
55 59first strand
Strand 2
A
35 42anti-parallel
Strand 3
A
112 117parallel
Strand 4
A
84 86anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il