Analysis of interatomic Contacts of Structural Units in PDB entry:
5DTI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DTI entry

There are 2 chains in PDB entry 5DTI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP -2ALA 542
B
 GLU 4LEU 540
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 53 helices in PDB entry 5DTI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
0 4Right-handed 310
Helix 2
AA2
A
5 7Right-handed 310
Helix 3
AA3
A
42 46Right-handed 310
Helix 4
AA4
A
80 85Right-handed alpha
Helix 5
AA5
A
130 134Right-handed 310
Helix 6
AA6
A
135 143Right-handed alpha
Helix 7
AA7
A
153 159Right-handed alpha
Helix 8
AA8
A
170 187Right-handed alpha
Helix 9
AA9
A
188 190Right-handed 310
Helix 10
AB1
A
203 214Right-handed alpha
Helix 11
AB2
A
215 220Right-handed alpha
Helix 12
AB3
A
241 255Right-handed alpha
Helix 13
AB4
A
266 276Right-handed alpha
Helix 14
AB5
A
277 285Right-handed alpha
Helix 15
AB6
A
286 288Right-handed 310
Helix 16
AB7
A
311 319Right-handed alpha
Helix 17
AB8
A
335 340Right-handed alpha
Helix 18
AB9
A
355 367Right-handed alpha
Helix 19
AC1
A
371 383Right-handed alpha
Helix 20
AC2
A
390 407Right-handed alpha
Helix 21
AC3
A
407 421Right-handed alpha
Helix 22
AC4
A
440 444Right-handed 310
Helix 23
AC5
A
450 455Right-handed alpha
Helix 24
AC6
A
456 464Right-handed 310
Helix 25
AC7
A
466 487Right-handed alpha
Helix 26
AC8
A
525 534Right-handed alpha
Helix 27
AC9
A
535 540Right-handed 310
Helix 28
AD1
B
5 7Right-handed 310
Helix 29
AD2
B
42 46Right-handed 310
Helix 30
AD3
B
80 85Right-handed alpha
Helix 31
AD4
B
130 134Right-handed 310
Helix 32
AD5
B
135 143Right-handed alpha
Helix 33
AD6
B
153 159Right-handed alpha
Helix 34
AD7
B
170 187Right-handed alpha
Helix 35
AD8
B
188 190Right-handed 310
Helix 36
AD9
B
203 214Right-handed alpha
Helix 37
AE1
B
215 220Right-handed alpha
Helix 38
AE2
B
240 255Right-handed alpha
Helix 39
AE3
B
266 276Right-handed alpha
Helix 40
AE4
B
277 285Right-handed alpha
Helix 41
AE5
B
286 288Right-handed 310
Helix 42
AE6
B
311 319Right-handed alpha
Helix 43
AE7
B
335 340Right-handed alpha
Helix 44
AE8
B
355 367Right-handed alpha
Helix 45
AE9
B
371 383Right-handed alpha
Helix 46
AF1
B
390 407Right-handed alpha
Helix 47
AF2
B
407 421Right-handed alpha
Helix 48
AF3
B
440 444Right-handed 310
Helix 49
AF4
B
450 455Right-handed alpha
Helix 50
AF5
B
456 464Right-handed 310
Helix 51
AF6
B
466 487Right-handed alpha
Helix 52
AF7
B
525 534Right-handed alpha
Helix 53
AF8
B
535 540Right-handed 310
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There are 7 sheets in PDB entry 5DTI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 12first strand
Strand 2
A
15 18anti-parallel
Strand 3
A
59 61parallel
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There are 11 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 24first strand
Strand 2
A
27 36anti-parallel
Strand 3
A
98 104anti-parallel
Strand 4
A
145 149anti-parallel
Strand 5
A
112 118parallel
Strand 6
A
192 202parallel
Strand 7
A
224 228parallel
Strand 8
A
325 331parallel
Strand 9
A
424 430parallel
Strand 10
A
509 513parallel
Strand 11
A
519 522anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
68 69first strand
Strand 2
A
92 93parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
239 240first strand
Strand 2
A
302 303parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 12first strand
Strand 2
B
15 18anti-parallel
Strand 3
B
59 61parallel
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There are 11 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
20 24first strand
Strand 2
B
27 36anti-parallel
Strand 3
B
98 104anti-parallel
Strand 4
B
145 149anti-parallel
Strand 5
B
112 118parallel
Strand 6
B
192 202parallel
Strand 7
B
224 228parallel
Strand 8
B
325 331parallel
Strand 9
B
424 430parallel
Strand 10
B
509 513parallel
Strand 11
B
519 522anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
68 69first strand
Strand 2
B
92 93parallel
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