Analysis of interatomic Contacts of Structural Units in PDB entry:
5DWQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5DWQ entry

There are 8 chains in PDB entry 5DWQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 135	TYR 476
B	SER 135	THR 477
C	VAL 136	THR 477
D	SER 135	THR 477
F	GLY 1	PRO 4
F	LYS 6	ALA 9
G	GLY 1	PRO 4
G	LYS 6	LEU 8

There are 58 helices in PDB entry 5DWQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	135	141	Right-handed alpha
Helix 2	AA2	A	142	153	Right-handed alpha
Helix 3	AA3	A	155	164	Right-handed alpha
Helix 4	AA4	A	165	179	Right-handed alpha
Helix 5	AA5	A	180	183	Right-handed 310
Helix 6	AA6	A	196	205	Right-handed alpha
Helix 7	AA7	A	217	229	Right-handed alpha
Helix 8	AA8	A	267	275	Right-handed alpha
Helix 9	AA9	A	299	311	Right-handed alpha
Helix 10	AB1	A	312	315	Right-handed 310
Helix 11	AB2	A	317	321	Right-handed 310
Helix 12	AB3	A	323	325	Right-handed 310
Helix 13	AB4	A	326	337	Right-handed alpha
Helix 14	AB5	A	344	348	Right-handed 310
Helix 15	AB6	A	363	367	Right-handed 310
Helix 16	AB7	B	136	141	Right-handed alpha
Helix 17	AB8	B	142	154	Right-handed alpha
Helix 18	AB9	B	155	164	Right-handed alpha
Helix 19	AC1	B	165	179	Right-handed alpha
Helix 20	AC2	B	180	183	Right-handed 310
Helix 21	AC3	B	196	205	Right-handed alpha
Helix 22	AC4	B	217	229	Right-handed alpha
Helix 23	AC5	B	267	275	Right-handed alpha
Helix 24	AC6	B	299	311	Right-handed alpha
Helix 25	AC7	B	323	325	Right-handed 310
Helix 26	AC8	B	326	336	Right-handed alpha
Helix 27	AC9	B	344	348	Right-handed 310
Helix 28	AD1	B	363	367	Right-handed 310
Helix 29	AD2	C	137	141	Right-handed alpha
Helix 30	AD3	C	142	153	Right-handed alpha
Helix 31	AD4	C	155	164	Right-handed alpha
Helix 32	AD5	C	165	179	Right-handed alpha
Helix 33	AD6	C	180	183	Right-handed 310
Helix 34	AD7	C	196	205	Right-handed alpha
Helix 35	AD8	C	217	229	Right-handed alpha
Helix 36	AD9	C	267	275	Right-handed alpha
Helix 37	AE1	C	299	311	Right-handed alpha
Helix 38	AE2	C	312	315	Right-handed 310
Helix 39	AE3	C	317	321	Right-handed 310
Helix 40	AE4	C	323	325	Right-handed 310
Helix 41	AE5	C	326	337	Right-handed alpha
Helix 42	AE6	C	344	348	Right-handed 310
Helix 43	AE7	C	363	367	Right-handed 310
Helix 44	AE8	D	136	141	Right-handed alpha
Helix 45	AE9	D	142	154	Right-handed alpha
Helix 46	AF1	D	155	165	Right-handed alpha
Helix 47	AF2	D	165	178	Right-handed alpha
Helix 48	AF3	D	179	183	Right-handed 310
Helix 49	AF4	D	196	205	Right-handed alpha
Helix 50	AF5	D	217	229	Right-handed alpha
Helix 51	AF6	D	267	275	Right-handed alpha
Helix 52	AF7	D	299	311	Right-handed alpha
Helix 53	AF8	D	312	314	Right-handed 310
Helix 54	AF9	D	317	321	Right-handed 310
Helix 55	AG1	D	323	325	Right-handed 310
Helix 56	AG2	D	326	336	Right-handed alpha
Helix 57	AG3	D	344	348	Right-handed 310
Helix 58	AG4	D	363	367	Right-handed 310

There are 16 sheets in PDB entry 5DWQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	235	239	first strand
Strand 2	A	209	214	parallel
Strand 3	A	187	191	parallel
Strand 4	A	251	256	parallel
Strand 5	A	279	286	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	353	358	first strand
Strand 2	A	289	297	anti-parallel
Strand 3	A	382	396	anti-parallel
Strand 4	A	401	405	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	353	358	first strand
Strand 2	A	289	297	anti-parallel
Strand 3	A	382	396	anti-parallel
Strand 4	A	417	428	anti-parallel
Strand 5	A	339	341	anti-parallel
Strand 6	A	473	474	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	369	377	first strand
Strand 2	A	433	442	anti-parallel
Strand 3	A	448	456	anti-parallel
Strand 4	A	461	468	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	235	239	first strand
Strand 2	B	209	214	parallel
Strand 3	B	187	191	parallel
Strand 4	B	251	256	parallel
Strand 5	B	279	286	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	353	358	first strand
Strand 2	B	289	297	anti-parallel
Strand 3	B	382	396	anti-parallel
Strand 4	B	401	405	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	353	358	first strand
Strand 2	B	289	297	anti-parallel
Strand 3	B	382	396	anti-parallel
Strand 4	B	417	428	anti-parallel
Strand 5	B	339	341	anti-parallel
Strand 6	B	473	474	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	369	377	first strand
Strand 2	B	433	443	anti-parallel
Strand 3	B	447	456	anti-parallel
Strand 4	B	462	468	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	235	239	first strand
Strand 2	C	209	214	parallel
Strand 3	C	187	191	parallel
Strand 4	C	251	256	parallel
Strand 5	C	279	286	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	353	358	first strand
Strand 2	C	289	297	anti-parallel
Strand 3	C	382	396	anti-parallel
Strand 4	C	401	405	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	353	358	first strand
Strand 2	C	289	297	anti-parallel
Strand 3	C	382	396	anti-parallel
Strand 4	C	417	428	anti-parallel
Strand 5	C	339	341	anti-parallel
Strand 6	C	473	474	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	369	377	first strand
Strand 2	C	433	443	anti-parallel
Strand 3	C	447	456	anti-parallel
Strand 4	C	462	468	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	235	239	first strand
Strand 2	D	209	214	parallel
Strand 3	D	187	191	parallel
Strand 4	D	251	256	parallel
Strand 5	D	279	286	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	353	358	first strand
Strand 2	D	289	297	anti-parallel
Strand 3	D	382	396	anti-parallel
Strand 4	D	401	405	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	353	358	first strand
Strand 2	D	289	297	anti-parallel
Strand 3	D	382	396	anti-parallel
Strand 4	D	417	428	anti-parallel
Strand 5	D	339	341	anti-parallel
Strand 6	D	473	474	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	369	377	first strand
Strand 2	D	433	442	anti-parallel
Strand 3	D	448	456	anti-parallel
Strand 4	D	462	468	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5DWQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
5DWQ