Analysis of interatomic Contacts of Structural Units in PDB entry:
5DX1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5DX1 entry

There are 10 chains in PDB entry 5DX1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 134	THR 477
B	ARG 134	THR 477
C	ARG 134	THR 477
D	ARG 134	THR 477
F	GLY 4	PRO 11
G	GLY 4	PRO 11
G	PRO 13	PRO 13
H	GLY 4	PRO 11
I	GLY 4	PRO 11
I	PRO 13	PRO 14

There are 58 helices in PDB entry 5DX1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	135	141	Right-handed alpha
Helix 2	AA2	A	142	154	Right-handed alpha
Helix 3	AA3	A	155	165	Right-handed alpha
Helix 4	AA4	A	165	179	Right-handed alpha
Helix 5	AA5	A	180	183	Right-handed 310
Helix 6	AA6	A	196	205	Right-handed alpha
Helix 7	AA7	A	217	229	Right-handed alpha
Helix 8	AA8	A	267	275	Right-handed alpha
Helix 9	AA9	A	299	311	Right-handed alpha
Helix 10	AB1	A	312	315	Right-handed 310
Helix 11	AB2	A	317	321	Right-handed 310
Helix 12	AB3	A	323	325	Right-handed 310
Helix 13	AB4	A	326	336	Right-handed alpha
Helix 14	AB5	A	344	348	Right-handed 310
Helix 15	AB6	A	363	367	Right-handed 310
Helix 16	AB7	B	135	141	Right-handed alpha
Helix 17	AB8	B	142	154	Right-handed alpha
Helix 18	AB9	B	155	164	Right-handed alpha
Helix 19	AC1	B	165	179	Right-handed alpha
Helix 20	AC2	B	180	183	Right-handed 310
Helix 21	AC3	B	196	205	Right-handed alpha
Helix 22	AC4	B	217	229	Right-handed alpha
Helix 23	AC5	B	268	275	Right-handed alpha
Helix 24	AC6	B	299	311	Right-handed alpha
Helix 25	AC7	B	312	314	Right-handed 310
Helix 26	AC8	B	323	325	Right-handed 310
Helix 27	AC9	B	326	336	Right-handed alpha
Helix 28	AD1	B	344	348	Right-handed 310
Helix 29	AD2	B	363	367	Right-handed 310
Helix 30	AD3	C	135	141	Right-handed alpha
Helix 31	AD4	C	142	154	Right-handed alpha
Helix 32	AD5	C	155	164	Right-handed alpha
Helix 33	AD6	C	165	179	Right-handed alpha
Helix 34	AD7	C	180	183	Right-handed 310
Helix 35	AD8	C	196	205	Right-handed alpha
Helix 36	AD9	C	217	229	Right-handed alpha
Helix 37	AE1	C	267	275	Right-handed alpha
Helix 38	AE2	C	299	311	Right-handed alpha
Helix 39	AE3	C	312	315	Right-handed 310
Helix 40	AE4	C	317	321	Right-handed 310
Helix 41	AE5	C	323	325	Right-handed 310
Helix 42	AE6	C	326	336	Right-handed alpha
Helix 43	AE7	C	344	348	Right-handed 310
Helix 44	AE8	C	363	367	Right-handed 310
Helix 45	AE9	D	135	141	Right-handed alpha
Helix 46	AF1	D	142	154	Right-handed alpha
Helix 47	AF2	D	155	164	Right-handed alpha
Helix 48	AF3	D	165	179	Right-handed alpha
Helix 49	AF4	D	180	183	Right-handed 310
Helix 50	AF5	D	196	205	Right-handed alpha
Helix 51	AF6	D	217	229	Right-handed alpha
Helix 52	AF7	D	267	275	Right-handed alpha
Helix 53	AF8	D	299	311	Right-handed alpha
Helix 54	AF9	D	312	314	Right-handed 310
Helix 55	AG1	D	323	325	Right-handed 310
Helix 56	AG2	D	326	336	Right-handed alpha
Helix 57	AG3	D	344	348	Right-handed 310
Helix 58	AG4	D	363	367	Right-handed 310

There are 16 sheets in PDB entry 5DX1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	235	239	first strand
Strand 2	A	209	214	parallel
Strand 3	A	187	191	parallel
Strand 4	A	251	256	parallel
Strand 5	A	279	286	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	353	358	first strand
Strand 2	A	289	297	anti-parallel
Strand 3	A	382	396	anti-parallel
Strand 4	A	401	405	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	353	358	first strand
Strand 2	A	289	297	anti-parallel
Strand 3	A	382	396	anti-parallel
Strand 4	A	417	428	anti-parallel
Strand 5	A	339	341	anti-parallel
Strand 6	A	473	474	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	369	377	first strand
Strand 2	A	433	442	anti-parallel
Strand 3	A	448	456	anti-parallel
Strand 4	A	462	468	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	235	239	first strand
Strand 2	B	209	214	parallel
Strand 3	B	187	191	parallel
Strand 4	B	251	256	parallel
Strand 5	B	279	286	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	353	358	first strand
Strand 2	B	289	297	anti-parallel
Strand 3	B	382	396	anti-parallel
Strand 4	B	401	405	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	353	358	first strand
Strand 2	B	289	297	anti-parallel
Strand 3	B	382	396	anti-parallel
Strand 4	B	417	428	anti-parallel
Strand 5	B	339	341	anti-parallel
Strand 6	B	473	474	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	369	377	first strand
Strand 2	B	433	443	anti-parallel
Strand 3	B	447	456	anti-parallel
Strand 4	B	462	468	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	235	239	first strand
Strand 2	C	209	214	parallel
Strand 3	C	187	191	parallel
Strand 4	C	251	256	parallel
Strand 5	C	279	286	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	353	358	first strand
Strand 2	C	289	297	anti-parallel
Strand 3	C	382	396	anti-parallel
Strand 4	C	401	405	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	353	358	first strand
Strand 2	C	289	297	anti-parallel
Strand 3	C	382	396	anti-parallel
Strand 4	C	417	428	anti-parallel
Strand 5	C	339	341	anti-parallel
Strand 6	C	473	474	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	369	377	first strand
Strand 2	C	433	442	anti-parallel
Strand 3	C	448	456	anti-parallel
Strand 4	C	461	468	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	235	239	first strand
Strand 2	D	209	214	parallel
Strand 3	D	187	191	parallel
Strand 4	D	251	256	parallel
Strand 5	D	279	286	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	353	358	first strand
Strand 2	D	289	297	anti-parallel
Strand 3	D	382	396	anti-parallel
Strand 4	D	401	405	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	353	358	first strand
Strand 2	D	289	297	anti-parallel
Strand 3	D	382	396	anti-parallel
Strand 4	D	417	428	anti-parallel
Strand 5	D	339	341	anti-parallel
Strand 6	D	473	474	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	369	377	first strand
Strand 2	D	433	442	anti-parallel
Strand 3	D	448	456	anti-parallel
Strand 4	D	462	468	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5DX1

Analysis of interatomic Contacts of Structural Units in PDB entry:
5DX1