Analysis of interatomic Contacts of Structural Units in PDB entry:
5E3X


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5E3X entry

There is 1 chain in PDB entry 5E3X (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 489
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 29 helices in PDB entry 5E3X. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 28Right-handed alpha
Helix 2
AA2
A
30 32Right-handed 310
Helix 3
AA3
A
33 53Right-handed alpha
Helix 4
AA4
A
54 64Right-handed alpha
Helix 5
AA5
A
68 87Right-handed alpha
Helix 6
AA6
A
89 111Right-handed alpha
Helix 7
AA7
A
112 114Right-handed 310
Helix 8
AA8
A
119 136Right-handed alpha
Helix 9
AA9
A
142 152Right-handed alpha
Helix 10
AB1
A
156 181Right-handed alpha
Helix 11
AB2
A
193 208Right-handed alpha
Helix 12
AB3
A
243 264Right-handed alpha
Helix 13
AB4
A
265 269Right-handed 310
Helix 14
AB5
A
271 275Right-handed 310
Helix 15
AB6
A
278 291Right-handed alpha
Helix 16
AB7
A
296 311Right-handed alpha
Helix 17
AB8
A
312 315Right-handed 310
Helix 18
AB9
A
318 326Right-handed alpha
Helix 19
AC1
A
334 338Right-handed 310
Helix 20
AC2
A
342 359Right-handed alpha
Helix 21
AC3
A
363 365Right-handed 310
Helix 22
AC4
A
366 380Right-handed alpha
Helix 23
AC5
A
394 399Right-handed 310
Helix 24
AC6
A
404 425Right-handed alpha
Helix 25
AC7
A
426 434Right-handed alpha
Helix 26
AC8
A
436 447Right-handed alpha
Helix 27
AC9
A
448 451Right-handed 310
Helix 28
AD1
A
455 465Right-handed alpha
Helix 29
AD2
A
470 486Right-handed alpha
Back to top of page

There is 1 sheet (AA1) in PDB entry 5E3X.

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
217 219first strand
Strand 2
A
232 237parallel
Strand 3
A
225 229anti-parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il