Analysis of interatomic Contacts of Structural Units in PDB entry:
5E6P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5E6P entry

There are 2 chains in PDB entry 5E6P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1275LEU 1842
B
 GLN 45GLY 121
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 5E6P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1280 1291Right-handed alpha
Helix 2
AA2
A
1312 1328Right-handed alpha
Helix 3
AA3
A
1329 1343Right-handed alpha
Helix 4
AA4
A
1347 1362Right-handed alpha
Helix 5
AA5
A
1365 1386Right-handed alpha
Helix 6
AA6
A
1399 1413Right-handed alpha
Helix 7
AA7
A
1413 1418Right-handed alpha
Helix 8
AA8
A
1421 1438Right-handed alpha
Helix 9
AA9
A
1490 1503Right-handed alpha
Helix 10
AB1
A
1507 1511Right-handed 310
Helix 11
AB2
A
1623 1648Right-handed alpha
Helix 12
AB3
A
1655 1672Right-handed alpha
Helix 13
AB4
A
1676 1688Right-handed alpha
Helix 14
AB5
A
1692 1699Right-handed alpha
Helix 15
AB6
A
1700 1703Right-handed 310
Helix 16
AB7
A
1709 1726Right-handed alpha
Helix 17
AB8
A
1740 1745Right-handed alpha
Helix 18
AB9
A
1746 1765Right-handed alpha
Helix 19
AC1
A
1770 1786Right-handed alpha
Helix 20
AC2
A
1787 1789Right-handed 310
Helix 21
AC3
A
1790 1805Right-handed alpha
Helix 22
AC4
A
1805 1816Right-handed alpha
Helix 23
AC5
A
1816 1822Right-handed alpha
Helix 24
AC6
A
1823 1835Right-handed alpha
Helix 25
AC7
B
101 111Right-handed alpha
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There are 4 sheets in PDB entry 5E6P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1479 1486first strand
Strand 2
A
1466 1474anti-parallel
Strand 3
A
1559 1563parallel
Strand 4
A
1518 1521anti-parallel
Strand 5
A
1529 1530anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1544 1545first strand
Strand 2
A
1592 1593parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1839 1841first strand
Strand 2
B
59 62anti-parallel
Strand 3
B
68 72anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
46 50first strand
Strand 2
B
115 120anti-parallel
Strand 3
B
88 92anti-parallel
Strand 4
B
95 96anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il