Analysis of interatomic Contacts of Structural Units in PDB entry:
5E9J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5E9J entry

There are 2 chains in PDB entry 5E9J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 167GLN 440
B
 SER 167GLN 440
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 5E9J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
169 193Right-handed alpha
Helix 2
AA2
A
211 218Right-handed alpha
Helix 3
AA3
A
229 245Right-handed alpha
Helix 4
AA4
A
266 271Right-handed alpha
Helix 5
AA5
A
286 292Right-handed 310
Helix 6
AA6
A
293 306Right-handed alpha
Helix 7
AA7
A
322 331Right-handed alpha
Helix 8
AA8
A
374 384Right-handed alpha
Helix 9
AA9
A
395 403Right-handed alpha
Helix 10
AB1
A
405 415Right-handed alpha
Helix 11
AB2
A
421 428Right-handed alpha
Helix 12
AB3
B
169 193Right-handed alpha
Helix 13
AB4
B
211 218Right-handed alpha
Helix 14
AB5
B
229 245Right-handed alpha
Helix 15
AB6
B
266 271Right-handed alpha
Helix 16
AB7
B
286 292Right-handed 310
Helix 17
AB8
B
293 306Right-handed alpha
Helix 18
AB9
B
320 331Right-handed alpha
Helix 19
AC1
B
374 384Right-handed alpha
Helix 20
AC2
B
395 403Right-handed alpha
Helix 21
AC3
B
405 415Right-handed alpha
Helix 22
AC4
B
421 429Right-handed alpha
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There are 4 sheets in PDB entry 5E9J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
254 259first strand
Strand 2
A
222 227parallel
Strand 3
A
200 204parallel
Strand 4
A
278 284parallel
Strand 5
A
308 319parallel
Strand 6
A
431 438anti-parallel
Strand 7
A
387 394anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
335 338first strand
Strand 2
A
341 345anti-parallel
Strand 3
A
357 362anti-parallel
Strand 4
A
369 371anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
254 259first strand
Strand 2
B
222 227parallel
Strand 3
B
200 204parallel
Strand 4
B
278 284parallel
Strand 5
B
308 319parallel
Strand 6
B
431 438anti-parallel
Strand 7
B
387 394anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
335 337first strand
Strand 2
B
341 345anti-parallel
Strand 3
B
357 362anti-parallel
Strand 4
B
369 371anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il