Analysis of interatomic Contacts of Structural Units in PDB entry:
5EC3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5EC3 entry

There is 1 chain in PDB entry 5EC3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 9MET 384
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 11 helices in PDB entry 5EC3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
28 41Right-handed alpha
Helix 2
AA2
A
49 53Right-handed 310
Helix 3
AA3
A
79 90Right-handed alpha
Helix 4
AA4
A
102 114Right-handed alpha
Helix 5
AA5
A
169 173Right-handed 310
Helix 6
AA6
A
192 205Right-handed alpha
Helix 7
AA7
A
250 260Right-handed alpha
Helix 8
AA8
A
273 284Right-handed alpha
Helix 9
AA9
A
292 304Right-handed alpha
Helix 10
AB1
A
313 321Right-handed alpha
Helix 11
AB2
A
360 378Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 5EC3. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 48first strand
Strand 2
A
57 64anti-parallel
Strand 3
A
67 74anti-parallel
Strand 4
A
15 25parallel
Strand 5
A
92 101anti-parallel
Strand 6
A
143 150parallel
Strand 7
A
129 137anti-parallel
Strand 8
A
117 126anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
207 212first strand
Strand 2
A
223 230anti-parallel
Strand 3
A
237 244anti-parallel
Strand 4
A
178 187parallel
Strand 5
A
263 271anti-parallel
Strand 6
A
347 354parallel
Strand 7
A
331 336anti-parallel
Strand 8
A
323 326anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il