Analysis of interatomic Contacts of Structural Units in PDB entry:
5EGH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5EGH entry

There are 2 chains in PDB entry 5EGH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 24	LYS 415
B	HIS 23	LYS 415

There are 39 helices in PDB entry 5EGH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	35	39	Right-handed 310
Helix 2	AA2	A	40	45	Right-handed alpha
Helix 3	AA3	A	47	57	Right-handed alpha
Helix 4	AA4	A	70	81	Right-handed alpha
Helix 5	AA5	A	83	88	Right-handed alpha
Helix 6	AA6	A	108	117	Right-handed 310
Helix 7	AA7	A	122	130	Right-handed alpha
Helix 8	AA8	A	162	179	Right-handed alpha
Helix 9	AA9	A	190	200	Right-handed alpha
Helix 10	AB1	A	203	227	Right-handed alpha
Helix 11	AB2	A	256	258	Right-handed 310
Helix 12	AB3	A	260	262	Right-handed 310
Helix 13	AB4	A	282	291	Right-handed alpha
Helix 14	AB5	A	302	304	Right-handed 310
Helix 15	AB6	A	305	309	Right-handed 310
Helix 16	AB7	A	332	336	Right-handed 310
Helix 17	AB8	A	360	364	Right-handed 310
Helix 18	AB9	A	387	397	Right-handed alpha
Helix 19	AC1	A	410	414	Right-handed 310
Helix 20	AC2	B	35	39	Right-handed 310
Helix 21	AC3	B	40	45	Right-handed alpha
Helix 22	AC4	B	47	57	Right-handed alpha
Helix 23	AC5	B	70	81	Right-handed alpha
Helix 24	AC6	B	83	88	Right-handed alpha
Helix 25	AC7	B	108	117	Right-handed 310
Helix 26	AC8	B	122	130	Right-handed alpha
Helix 27	AC9	B	162	179	Right-handed alpha
Helix 28	AD1	B	190	200	Right-handed alpha
Helix 29	AD2	B	203	227	Right-handed alpha
Helix 30	AD3	B	229	231	Right-handed 310
Helix 31	AD4	B	256	258	Right-handed 310
Helix 32	AD5	B	260	262	Right-handed 310
Helix 33	AD6	B	282	291	Right-handed alpha
Helix 34	AD7	B	302	304	Right-handed 310
Helix 35	AD8	B	305	309	Right-handed 310
Helix 36	AD9	B	332	336	Right-handed 310
Helix 37	AE1	B	360	364	Right-handed 310
Helix 38	AE2	B	387	397	Right-handed alpha
Helix 39	AE3	B	410	414	Right-handed 310

There are 12 sheets in PDB entry 5EGH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	153	155	first strand
Strand 2	A	134	137	parallel
Strand 3	A	184	189	parallel
Strand 4	A	25	31	parallel
Strand 5	A	233	238	parallel
Strand 6	A	367	370	anti-parallel
Strand 7	A	58	60	anti-parallel
Strand 8	A	378	380	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	63	64	first strand
Strand 2	A	383	384	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	96	first strand
Strand 2	A	101	104	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	244	245	first strand
Strand 2	A	352	353	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	252	254	first strand
Strand 2	A	328	330	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	264	268	first strand
Strand 2	A	273	278	anti-parallel
Strand 3	A	319	323	anti-parallel
Strand 4	A	296	300	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	153	155	first strand
Strand 2	B	134	137	parallel
Strand 3	B	184	189	parallel
Strand 4	B	25	31	parallel
Strand 5	B	233	238	parallel
Strand 6	B	367	370	anti-parallel
Strand 7	B	58	60	anti-parallel
Strand 8	B	378	380	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	63	64	first strand
Strand 2	B	383	384	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	93	96	first strand
Strand 2	B	101	104	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	244	245	first strand
Strand 2	B	352	353	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	252	254	first strand
Strand 2	B	328	330	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	264	268	first strand
Strand 2	B	273	278	anti-parallel
Strand 3	B	319	323	anti-parallel
Strand 4	B	296	300	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5EGH

Analysis of interatomic Contacts of Structural Units in PDB entry:
5EGH