Analysis of interatomic Contacts of Structural Units in PDB entry:
5EJ8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5EJ8 entry

There are 2 chains in PDB entry 5EJ8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LEU 556
B	MET 1	GLN 71

There are216 helices in PDB entry 5EJ8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2	20	Right-handed alpha
Helix 2	AA2	A	34	44	Right-handed alpha
Helix 3	AA3	A	54	70	Right-handed alpha
Helix 4	AA4	A	80	85	Right-handed alpha
Helix 5	AA5	A	86	97	Right-handed alpha
Helix 6	AA6	A	108	112	Right-handed 310
Helix 7	AA7	A	144	158	Right-handed alpha
Helix 8	AA8	A	182	188	Right-handed alpha
Helix 9	AA9	A	189	195	Right-handed 310
Helix 10	AB1	A	213	218	Right-handed alpha
Helix 11	AB2	A	230	245	Right-handed alpha
Helix 12	AB3	A	262	267	Right-handed alpha
Helix 13	AB4	A	269	277	Right-handed alpha
Helix 14	AB5	A	291	301	Right-handed alpha
Helix 15	AB6	A	329	337	Right-handed alpha
Helix 16	AB7	A	348	362	Right-handed alpha
Helix 17	AB8	A	368	375	Right-handed alpha
Helix 18	AB9	A	376	380	Right-handed 310
Helix 19	AC1	A	391	401	Right-handed alpha
Helix 20	AC2	A	420	433	Right-handed alpha
Helix 21	AC3	A	442	448	Right-handed alpha
Helix 22	AC4	A	449	457	Right-handed 310
Helix 23	AC5	A	473	478	Right-handed alpha
Helix 24	AC6	A	481	489	Right-handed alpha
Helix 25	AC7	A	497	504	Right-handed alpha
Helix 26	AC8	A	513	525	Right-handed alpha
Helix 27	AC9	A	540	555	Right-handed alpha
Helix 28	AD1	B	2	20	Right-handed alpha
Helix 29	AD2	B	34	44	Right-handed alpha
Helix 30	AD3	B	54	70	Right-handed alpha
Helix 31	AD4	B	80	85	Right-handed alpha
Helix 32	AD5	B	86	97	Right-handed alpha
Helix 33	AD6	B	108	112	Right-handed 310
Helix 34	AD7	B	144	158	Right-handed alpha
Helix 35	AD8	B	182	188	Right-handed alpha
Helix 36	AD9	B	189	195	Right-handed 310
Helix 37	AE1	B	213	218	Right-handed alpha
Helix 38	AE2	B	230	245	Right-handed alpha
Helix 39	AE3	B	262	267	Right-handed alpha
Helix 40	AE4	B	269	277	Right-handed alpha
Helix 41	AE5	B	291	301	Right-handed alpha
Helix 42	AE6	B	329	337	Right-handed alpha
Helix 43	AE7	B	347	362	Right-handed alpha
Helix 44	AE8	B	368	376	Right-handed alpha
Helix 45	AE9	B	377	380	Right-handed 310
Helix 46	AF1	B	391	401	Right-handed alpha
Helix 47	AF2	B	420	433	Right-handed alpha
Helix 48	AF3	B	442	448	Right-handed alpha
Helix 49	AF4	B	449	457	Right-handed 310
Helix 50	AF5	B	473	478	Right-handed alpha
Helix 51	AF6	B	481	489	Right-handed alpha
Helix 52	AF7	B	497	504	Right-handed alpha
Helix 53	AF8	B	513	525	Right-handed alpha
Helix 54	AF9	B	540	555	Right-handed alpha
Helix 55	AG1	C	2	20	Right-handed alpha
Helix 56	AG2	C	34	44	Right-handed alpha
Helix 57	AG3	C	54	70	Right-handed alpha
Helix 58	AG4	C	80	85	Right-handed alpha
Helix 59	AG5	C	86	97	Right-handed alpha
Helix 60	AG6	C	108	112	Right-handed 310
Helix 61	AG7	C	144	158	Right-handed alpha
Helix 62	AG8	C	182	188	Right-handed alpha
Helix 63	AG9	C	189	195	Right-handed 310
Helix 64	AH1	C	213	218	Right-handed alpha
Helix 65	AH2	C	230	245	Right-handed alpha
Helix 66	AH3	C	262	267	Right-handed alpha
Helix 67	AH4	C	269	277	Right-handed alpha
Helix 68	AH5	C	291	301	Right-handed alpha
Helix 69	AH6	C	329	337	Right-handed alpha
Helix 70	AH7	C	347	362	Right-handed alpha
Helix 71	AH8	C	368	375	Right-handed alpha
Helix 72	AH9	C	376	380	Right-handed 310
Helix 73	AI1	C	391	401	Right-handed alpha
Helix 74	AI2	C	420	433	Right-handed alpha
Helix 75	AI3	C	442	448	Right-handed alpha
Helix 76	AI4	C	451	456	Right-handed alpha
Helix 77	AI5	C	473	478	Right-handed alpha
Helix 78	AI6	C	481	489	Right-handed alpha
Helix 79	AI7	C	497	504	Right-handed alpha
Helix 80	AI8	C	513	525	Right-handed alpha
Helix 81	AI9	C	540	555	Right-handed alpha
Helix 82	AJ1	D	2	20	Right-handed alpha
Helix 83	AJ2	D	34	44	Right-handed alpha
Helix 84	AJ3	D	54	70	Right-handed alpha
Helix 85	AJ4	D	80	85	Right-handed alpha
Helix 86	AJ5	D	86	97	Right-handed alpha
Helix 87	AJ6	D	108	112	Right-handed 310
Helix 88	AJ7	D	144	158	Right-handed alpha
Helix 89	AJ8	D	182	188	Right-handed alpha
Helix 90	AJ9	D	189	195	Right-handed 310
Helix 91	AK1	D	213	218	Right-handed alpha
Helix 92	AK2	D	230	245	Right-handed alpha
Helix 93	AK3	D	262	267	Right-handed alpha
Helix 94	AK4	D	269	277	Right-handed alpha
Helix 95	AK5	D	291	301	Right-handed alpha
Helix 96	AK6	D	329	337	Right-handed alpha
Helix 97	AK7	D	347	362	Right-handed alpha
Helix 98	AK8	D	368	375	Right-handed alpha
Helix 99	AK9	D	376	380	Right-handed 310
Helix 100	AL1	D	391	401	Right-handed alpha
Helix 101	AL2	D	420	433	Right-handed alpha
Helix 102	AL3	D	442	448	Right-handed alpha
Helix 103	AL4	D	449	457	Right-handed 310
Helix 104	AL5	D	473	478	Right-handed alpha
Helix 105	AL6	D	481	489	Right-handed alpha
Helix 106	AL7	D	497	504	Right-handed alpha
Helix 107	AL8	D	513	525	Right-handed alpha
Helix 108	AL9	D	540	554	Right-handed alpha
Helix 109	AM1	E	2	20	Right-handed alpha
Helix 110	AM2	E	34	44	Right-handed alpha
Helix 111	AM3	E	54	70	Right-handed alpha
Helix 112	AM4	E	80	85	Right-handed alpha
Helix 113	AM5	E	86	97	Right-handed alpha
Helix 114	AM6	E	108	112	Right-handed 310
Helix 115	AM7	E	144	158	Right-handed alpha
Helix 116	AM8	E	182	188	Right-handed alpha
Helix 117	AM9	E	189	195	Right-handed 310
Helix 118	AN1	E	213	218	Right-handed alpha
Helix 119	AN2	E	230	245	Right-handed alpha
Helix 120	AN3	E	262	267	Right-handed alpha
Helix 121	AN4	E	269	277	Right-handed alpha
Helix 122	AN5	E	291	301	Right-handed alpha
Helix 123	AN6	E	329	337	Right-handed alpha
Helix 124	AN7	E	347	362	Right-handed alpha
Helix 125	AN8	E	368	376	Right-handed alpha
Helix 126	AN9	E	377	380	Right-handed 310
Helix 127	AO1	E	391	401	Right-handed alpha
Helix 128	AO2	E	420	433	Right-handed alpha
Helix 129	AO3	E	442	448	Right-handed alpha
Helix 130	AO4	E	449	457	Right-handed 310
Helix 131	AO5	E	473	478	Right-handed alpha
Helix 132	AO6	E	481	489	Right-handed alpha
Helix 133	AO7	E	497	504	Right-handed alpha
Helix 134	AO8	E	513	525	Right-handed alpha
Helix 135	AO9	E	540	555	Right-handed alpha
Helix 136	AP1	F	2	20	Right-handed alpha
Helix 137	AP2	F	34	44	Right-handed alpha
Helix 138	AP3	F	54	70	Right-handed alpha
Helix 139	AP4	F	80	85	Right-handed alpha
Helix 140	AP5	F	86	97	Right-handed alpha
Helix 141	AP6	F	108	112	Right-handed 310
Helix 142	AP7	F	144	158	Right-handed alpha
Helix 143	AP8	F	182	188	Right-handed alpha
Helix 144	AP9	F	189	195	Right-handed 310
Helix 145	AQ1	F	213	218	Right-handed alpha
Helix 146	AQ2	F	230	245	Right-handed alpha
Helix 147	AQ3	F	262	267	Right-handed alpha
Helix 148	AQ4	F	269	277	Right-handed alpha
Helix 149	AQ5	F	291	301	Right-handed alpha
Helix 150	AQ6	F	329	337	Right-handed alpha
Helix 151	AQ7	F	348	362	Right-handed alpha
Helix 152	AQ8	F	368	376	Right-handed alpha
Helix 153	AQ9	F	377	380	Right-handed 310
Helix 154	AR1	F	391	401	Right-handed alpha
Helix 155	AR2	F	420	433	Right-handed alpha
Helix 156	AR3	F	442	448	Right-handed alpha
Helix 157	AR4	F	451	456	Right-handed alpha
Helix 158	AR5	F	473	478	Right-handed alpha
Helix 159	AR6	F	481	489	Right-handed alpha
Helix 160	AR7	F	497	504	Right-handed alpha
Helix 161	AR8	F	513	525	Right-handed alpha
Helix 162	AR9	F	540	555	Right-handed alpha
Helix 163	AS1	G	2	20	Right-handed alpha
Helix 164	AS2	G	34	44	Right-handed alpha
Helix 165	AS3	G	54	70	Right-handed alpha
Helix 166	AS4	G	80	85	Right-handed alpha
Helix 167	AS5	G	86	97	Right-handed alpha
Helix 168	AS6	G	108	112	Right-handed 310
Helix 169	AS7	G	144	158	Right-handed alpha
Helix 170	AS8	G	182	188	Right-handed alpha
Helix 171	AS9	G	189	195	Right-handed 310
Helix 172	AT1	G	213	218	Right-handed alpha
Helix 173	AT2	G	230	245	Right-handed alpha
Helix 174	AT3	G	262	267	Right-handed alpha
Helix 175	AT4	G	269	277	Right-handed alpha
Helix 176	AT5	G	291	301	Right-handed alpha
Helix 177	AT6	G	329	337	Right-handed alpha
Helix 178	AT7	G	347	362	Right-handed alpha
Helix 179	AT8	G	368	375	Right-handed alpha
Helix 180	AT9	G	376	380	Right-handed 310
Helix 181	AU1	G	391	401	Right-handed alpha
Helix 182	AU2	G	420	433	Right-handed alpha
Helix 183	AU3	G	442	448	Right-handed alpha
Helix 184	AU4	G	449	457	Right-handed 310
Helix 185	AU5	G	473	478	Right-handed alpha
Helix 186	AU6	G	481	489	Right-handed alpha
Helix 187	AU7	G	497	504	Right-handed alpha
Helix 188	AU8	G	513	525	Right-handed alpha
Helix 189	AU9	G	540	555	Right-handed alpha
Helix 190	AV1	H	2	20	Right-handed alpha
Helix 191	AV2	H	34	44	Right-handed alpha
Helix 192	AV3	H	54	70	Right-handed alpha
Helix 193	AV4	H	80	85	Right-handed alpha
Helix 194	AV5	H	86	97	Right-handed alpha
Helix 195	AV6	H	108	112	Right-handed 310
Helix 196	AV7	H	144	158	Right-handed alpha
Helix 197	AV8	H	182	188	Right-handed alpha
Helix 198	AV9	H	189	195	Right-handed 310
Helix 199	AW1	H	213	218	Right-handed alpha
Helix 200	AW2	H	230	245	Right-handed alpha
Helix 201	AW3	H	262	267	Right-handed alpha
Helix 202	AW4	H	269	277	Right-handed alpha
Helix 203	AW5	H	291	301	Right-handed alpha
Helix 204	AW6	H	329	337	Right-handed alpha
Helix 205	AW7	H	347	362	Right-handed alpha
Helix 206	AW8	H	368	375	Right-handed alpha
Helix 207	AW9	H	376	380	Right-handed 310
Helix 208	AX1	H	391	401	Right-handed alpha
Helix 209	AX2	H	420	433	Right-handed alpha
Helix 210	AX3	H	442	448	Right-handed alpha
Helix 211	AX4	H	449	457	Right-handed 310
Helix 212	AX5	H	473	478	Right-handed alpha
Helix 213	AX6	H	481	489	Right-handed alpha
Helix 214	AX7	H	497	504	Right-handed alpha
Helix 215	AX8	H	513	525	Right-handed alpha
Helix 216	AX9	H	540	555	Right-handed alpha

There are 28 sheets in PDB entry 5EJ8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	48	51	first strand
Strand 2	A	25	28	parallel
Strand 3	A	73	77	parallel
Strand 4	A	100	106	parallel
Strand 5	A	164	169	parallel
Strand 6	A	132	135	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	200	201	first strand
Strand 2	C	323	327	parallel
Strand 3	C	305	310	parallel
Strand 4	C	281	285	parallel
Strand 5	C	222	226	parallel
Strand 6	C	248	250	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	205	207	first strand
Strand 2	C	205	207	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	248	250	first strand
Strand 2	A	222	226	parallel
Strand 3	A	281	285	parallel
Strand 4	A	305	310	parallel
Strand 5	A	323	327	parallel
Strand 6	C	200	201	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	409	410	first strand
Strand 2	A	385	388	parallel
Strand 3	A	436	441	parallel
Strand 4	A	462	468	parallel
Strand 5	A	530	536	parallel
Strand 6	A	507	509	parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	48	51	first strand
Strand 2	B	25	28	parallel
Strand 3	B	73	77	parallel
Strand 4	B	100	106	parallel
Strand 5	B	164	169	parallel
Strand 6	B	132	135	parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	200	201	first strand
Strand 2	D	323	327	parallel
Strand 3	D	305	310	parallel
Strand 4	D	281	285	parallel
Strand 5	D	222	226	parallel
Strand 6	D	248	250	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	205	207	first strand
Strand 2	D	205	207	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	248	250	first strand
Strand 2	B	222	226	parallel
Strand 3	B	281	285	parallel
Strand 4	B	305	310	parallel
Strand 5	B	323	327	parallel
Strand 6	D	200	201	parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	409	410	first strand
Strand 2	B	385	388	parallel
Strand 3	B	436	441	parallel
Strand 4	B	462	468	parallel
Strand 5	B	530	536	parallel
Strand 6	B	507	509	parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	48	51	first strand
Strand 2	C	25	28	parallel
Strand 3	C	73	77	parallel
Strand 4	C	100	106	parallel
Strand 5	C	164	169	parallel
Strand 6	C	132	135	parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	409	410	first strand
Strand 2	C	385	388	parallel
Strand 3	C	436	441	parallel
Strand 4	C	462	468	parallel
Strand 5	C	530	536	parallel
Strand 6	C	507	509	parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	48	51	first strand
Strand 2	D	25	28	parallel
Strand 3	D	73	77	parallel
Strand 4	D	100	106	parallel
Strand 5	D	164	169	parallel
Strand 6	D	132	135	parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	409	410	first strand
Strand 2	D	385	388	parallel
Strand 3	D	436	441	parallel
Strand 4	D	462	468	parallel
Strand 5	D	530	536	parallel
Strand 6	D	507	509	parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	48	51	first strand
Strand 2	E	25	28	parallel
Strand 3	E	73	77	parallel
Strand 4	E	100	106	parallel
Strand 5	E	164	169	parallel
Strand 6	E	132	135	parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	200	201	first strand
Strand 2	G	323	327	parallel
Strand 3	G	305	310	parallel
Strand 4	G	281	285	parallel
Strand 5	G	222	226	parallel
Strand 6	G	248	250	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	205	207	first strand
Strand 2	G	205	207	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	248	250	first strand
Strand 2	E	222	226	parallel
Strand 3	E	281	285	parallel
Strand 4	E	305	310	parallel
Strand 5	E	323	327	parallel
Strand 6	G	200	201	parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	409	410	first strand
Strand 2	E	385	388	parallel
Strand 3	E	436	441	parallel
Strand 4	E	462	468	parallel
Strand 5	E	530	536	parallel
Strand 6	E	507	509	parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	48	51	first strand
Strand 2	F	25	28	parallel
Strand 3	F	73	77	parallel
Strand 4	F	100	106	parallel
Strand 5	F	164	169	parallel
Strand 6	F	132	135	parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	200	201	first strand
Strand 2	H	323	327	parallel
Strand 3	H	305	310	parallel
Strand 4	H	281	285	parallel
Strand 5	H	222	226	parallel
Strand 6	H	248	250	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	205	207	first strand
Strand 2	H	205	207	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	248	250	first strand
Strand 2	F	222	226	parallel
Strand 3	F	281	285	parallel
Strand 4	F	305	310	parallel
Strand 5	F	323	327	parallel
Strand 6	H	200	201	parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	409	410	first strand
Strand 2	F	385	388	parallel
Strand 3	F	436	441	parallel
Strand 4	F	462	468	parallel
Strand 5	F	530	536	parallel
Strand 6	F	507	509	parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	48	51	first strand
Strand 2	G	25	28	parallel
Strand 3	G	73	77	parallel
Strand 4	G	100	106	parallel
Strand 5	G	164	169	parallel
Strand 6	G	132	135	parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	409	410	first strand
Strand 2	G	385	388	parallel
Strand 3	G	436	441	parallel
Strand 4	G	462	468	parallel
Strand 5	G	530	536	parallel
Strand 6	G	507	509	parallel

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There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	48	51	first strand
Strand 2	H	25	28	parallel
Strand 3	H	73	77	parallel
Strand 4	H	100	106	parallel
Strand 5	H	164	169	parallel
Strand 6	H	132	135	parallel

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There are 6 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	409	410	first strand
Strand 2	H	385	388	parallel
Strand 3	H	436	441	parallel
Strand 4	H	462	468	parallel
Strand 5	H	530	536	parallel
Strand 6	H	507	509	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5EJ8

Analysis of interatomic Contacts of Structural Units in PDB entry:
5EJ8