Analysis of interatomic Contacts of Structural Units in PDB entry:
5EJK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5EJK entry

There are 5 chains in PDB entry 5EJK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 1	ILE 269
B	PRO 1	ILE 269
C	PRO 1	ILE 269
D	PRO 1	ILE 269
E	PRO 1	VAL 249

There are 75 helices in PDB entry 5EJK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1	13	Right-handed alpha
Helix 2	AA2	A	15	23	Right-handed alpha
Helix 3	AA3	A	26	36	Right-handed alpha
Helix 4	AA4	A	69	72	Right-handed 310
Helix 5	AA5	A	97	113	Right-handed alpha
Helix 6	AA6	A	128	139	Right-handed alpha
Helix 7	AA7	A	153	174	Right-handed alpha
Helix 8	AA8	A	181	198	Right-handed alpha
Helix 9	AA9	A	207	213	Right-handed alpha
Helix 10	AB1	B	2	13	Right-handed alpha
Helix 11	AB2	B	15	23	Right-handed alpha
Helix 12	AB3	B	26	37	Right-handed alpha
Helix 13	AB4	B	97	113	Right-handed alpha
Helix 14	AB5	B	123	128	Right-handed alpha
Helix 15	AB6	B	128	139	Right-handed alpha
Helix 16	AB7	B	153	175	Right-handed alpha
Helix 17	AB8	B	184	199	Right-handed alpha
Helix 18	AB9	B	207	214	Right-handed alpha
Helix 19	AC1	C	2	13	Right-handed alpha
Helix 20	AC2	C	15	23	Right-handed alpha
Helix 21	AC3	C	26	37	Right-handed alpha
Helix 22	AC4	C	69	72	Right-handed 310
Helix 23	AC5	C	97	113	Right-handed alpha
Helix 24	AC6	C	128	139	Right-handed alpha
Helix 25	AC7	C	154	174	Right-handed alpha
Helix 26	AC8	C	181	198	Right-handed alpha
Helix 27	AC9	D	2	13	Right-handed alpha
Helix 28	AD1	D	15	24	Right-handed alpha
Helix 29	AD2	D	26	37	Right-handed alpha
Helix 30	AD3	D	68	72	Right-handed 310
Helix 31	AD4	D	97	112	Right-handed alpha
Helix 32	AD5	D	128	138	Right-handed alpha
Helix 33	AD6	D	149	154	Right-handed alpha
Helix 34	AD7	D	155	175	Right-handed alpha
Helix 35	AD8	D	181	198	Right-handed alpha
Helix 36	AD9	E	2	13	Right-handed alpha
Helix 37	AE1	E	15	23	Right-handed alpha
Helix 38	AE2	E	26	36	Right-handed alpha
Helix 39	AE3	E	69	72	Right-handed 310
Helix 40	AE4	E	97	113	Right-handed alpha
Helix 41	AE5	E	128	139	Right-handed alpha
Helix 42	AE6	E	153	158	Right-handed alpha
Helix 43	AE7	E	158	174	Right-handed alpha
Helix 44	AE8	E	181	196	Right-handed alpha
Helix 45	AE9	E	207	214	Right-handed alpha
Helix 46	AF1	F	2	13	Right-handed alpha
Helix 47	AF2	F	15	23	Right-handed alpha
Helix 48	AF3	F	26	36	Right-handed alpha
Helix 49	AF4	F	68	72	Right-handed 310
Helix 50	AF5	F	97	112	Right-handed alpha
Helix 51	AF6	F	123	128	Right-handed alpha
Helix 52	AF7	F	128	139	Right-handed alpha
Helix 53	AF8	F	154	174	Right-handed alpha
Helix 54	AF9	F	184	198	Right-handed alpha
Helix 55	AG1	F	209	214	Right-handed alpha
Helix 56	AG2	G	2	13	Right-handed alpha
Helix 57	AG3	G	15	24	Right-handed alpha
Helix 58	AG4	G	26	36	Right-handed alpha
Helix 59	AG5	G	69	72	Right-handed 310
Helix 60	AG6	G	97	113	Right-handed alpha
Helix 61	AG7	G	128	138	Right-handed alpha
Helix 62	AG8	G	157	175	Right-handed alpha
Helix 63	AG9	G	181	183	Right-handed 310
Helix 64	AH1	G	184	198	Right-handed alpha
Helix 65	AH2	G	207	213	Right-handed alpha
Helix 66	AH3	H	2	13	Right-handed alpha
Helix 67	AH4	H	15	24	Right-handed alpha
Helix 68	AH5	H	26	37	Right-handed alpha
Helix 69	AH6	H	38	42	Right-handed 310
Helix 70	AH7	H	69	72	Right-handed 310
Helix 71	AH8	H	97	113	Right-handed alpha
Helix 72	AH9	H	128	139	Right-handed alpha
Helix 73	AI1	H	155	173	Right-handed alpha
Helix 74	AI2	H	184	198	Right-handed alpha
Helix 75	AI3	H	207	213	Right-handed alpha

There are 16 sheets in PDB entry 5EJK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	88	93	first strand
Strand 2	A	76	82	anti-parallel
Strand 3	A	60	67	anti-parallel
Strand 4	A	117	119	parallel
Strand 5	A	141	143	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	257	261	first strand
Strand 2	A	246	251	anti-parallel
Strand 3	A	233	242	anti-parallel
Strand 4	A	223	227	anti-parallel
Strand 5	A	265	267	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	88	93	first strand
Strand 2	B	76	82	anti-parallel
Strand 3	B	60	67	anti-parallel
Strand 4	B	117	119	parallel
Strand 5	B	141	143	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	257	261	first strand
Strand 2	B	246	251	anti-parallel
Strand 3	B	233	242	anti-parallel
Strand 4	B	223	227	anti-parallel
Strand 5	B	265	267	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	88	93	first strand
Strand 2	C	76	82	anti-parallel
Strand 3	C	60	67	anti-parallel
Strand 4	C	117	119	parallel
Strand 5	C	141	143	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	257	261	first strand
Strand 2	C	246	251	anti-parallel
Strand 3	C	233	242	anti-parallel
Strand 4	C	223	227	anti-parallel
Strand 5	C	265	267	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	88	90	first strand
Strand 2	D	78	82	anti-parallel
Strand 3	D	60	65	anti-parallel
Strand 4	D	117	121	parallel
Strand 5	D	141	145	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	257	261	first strand
Strand 2	D	246	251	anti-parallel
Strand 3	D	233	242	anti-parallel
Strand 4	D	224	227	anti-parallel
Strand 5	D	265	267	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	88	93	first strand
Strand 2	E	76	82	anti-parallel
Strand 3	E	60	67	anti-parallel
Strand 4	E	117	119	parallel
Strand 5	E	141	143	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	257	261	first strand
Strand 2	E	246	251	anti-parallel
Strand 3	E	233	242	anti-parallel
Strand 4	E	223	227	anti-parallel
Strand 5	E	265	267	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	88	93	first strand
Strand 2	F	76	82	anti-parallel
Strand 3	F	60	66	anti-parallel
Strand 4	F	117	119	parallel
Strand 5	F	141	143	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	257	261	first strand
Strand 2	F	246	251	anti-parallel
Strand 3	F	233	242	anti-parallel
Strand 4	F	223	227	anti-parallel
Strand 5	F	265	267	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	87	93	first strand
Strand 2	G	76	82	anti-parallel
Strand 3	G	60	67	anti-parallel
Strand 4	G	117	119	parallel
Strand 5	G	141	142	parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	257	261	first strand
Strand 2	G	246	251	anti-parallel
Strand 3	G	233	242	anti-parallel
Strand 4	G	223	227	anti-parallel
Strand 5	G	265	267	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	88	93	first strand
Strand 2	H	76	82	anti-parallel
Strand 3	H	60	67	anti-parallel
Strand 4	H	117	119	parallel
Strand 5	H	141	143	parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	257	261	first strand
Strand 2	H	246	251	anti-parallel
Strand 3	H	233	242	anti-parallel
Strand 4	H	224	227	anti-parallel
Strand 5	H	265	267	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5EJK

Analysis of interatomic Contacts of Structural Units in PDB entry:
5EJK