Analysis of interatomic Contacts of Structural Units in PDB entry:
5EXU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5EXU entry

There are 2 chains in PDB entry 5EXU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
SER 2PHE 61
A
ASN 65TYR 217
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 2 helices in PDB entry 5EXU. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
53 61Right-handed 310
Helix 2
AA2
A
77 82Right-handed alpha
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There are 2 sheets in PDB entry 5EXU. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
136 139first strand
Strand 2
A
152 163anti-parallel
Strand 3
A
168 179anti-parallel
Strand 4
A
87 95anti-parallel
Strand 5
A
100 110anti-parallel
Strand 6
A
113 123anti-parallel
Strand 7
A
8 18parallel
Strand 8
A
21 32anti-parallel
Strand 9
A
37 46anti-parallel
Strand 10
A
206 212anti-parallel
Strand 11
A
194 200anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
136 139first strand
Strand 2
A
152 163anti-parallel
Strand 3
A
143 149anti-parallel
Strand 4
A
189 192anti-parallel
Strand 5
A
215 216anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il