Analysis of interatomic Contacts of Structural Units in PDB entry:
5F0L


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5F0L entry

There are 4 chains in PDB entry 5F0L (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLY 12GLN 469
B
PHE 8LYS 301
C
THR 4LYS 158
D
GLN 551MET 560
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 5F0L. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
13 37Right-handed alpha
Helix 2
AA2
A
38 52Right-handed alpha
Helix 3
AA3
A
53 55Right-handed 310
Helix 4
AA4
A
59 87Right-handed alpha
Helix 5
AA5
A
93 99Right-handed alpha
Helix 6
AA6
A
103 122Right-handed alpha
Helix 7
AA7
A
125 137Right-handed alpha
Helix 8
AA8
A
138 140Right-handed 310
Helix 9
AA9
A
142 158Right-handed alpha
Helix 10
AB1
A
175 197Right-handed alpha
Helix 11
AB2
A
205 229Right-handed alpha
Helix 12
AB3
A
234 241Right-handed alpha
Helix 13
AB4
A
241 254Right-handed alpha
Helix 14
AB5
A
255 270Right-handed alpha
Helix 15
AB6
A
271 278Right-handed alpha
Helix 16
AB7
A
278 287Right-handed alpha
Helix 17
AB8
A
294 311Right-handed alpha
Helix 18
AB9
A
323 339Right-handed alpha
Helix 19
AC1
A
343 362Right-handed alpha
Helix 20
AC2
A
365 383Right-handed alpha
Helix 21
AC3
A
392 409Right-handed alpha
Helix 22
AC4
A
412 417Right-handed alpha
Helix 23
AC5
A
422 428Right-handed 310
Helix 24
AC6
A
429 447Right-handed alpha
Helix 25
AC7
A
453 469Right-handed alpha
Helix 26
AC8
B
32 34Right-handed 310
Helix 27
AC9
B
81 83Right-handed 310
Helix 28
AD1
B
253 256Right-handed 310
Helix 29
AD2
C
17 23Right-handed alpha
Helix 30
AD3
C
41 45Right-handed 310
Helix 31
AD4
C
71 85Right-handed alpha
Helix 32
AD5
C
96 101Right-handed 310
Helix 33
AD6
C
107 110Right-handed 310
Helix 34
AD7
C
111 132Right-handed alpha
Helix 35
AD8
C
132 138Right-handed alpha
Helix 36
AD9
C
138 147Right-handed alpha
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There are 8 sheets in PDB entry 5F0L. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
12 18first strand
Strand 2
B
48 56anti-parallel
Strand 3
B
105 111anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
26 30first strand
Strand 2
B
36 42anti-parallel
Strand 3
B
143 151parallel
Strand 4
B
126 136anti-parallel
Strand 5
B
68 78anti-parallel
Strand 6
B
85 96anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
26 30first strand
Strand 2
B
36 42anti-parallel
Strand 3
B
143 151parallel
Strand 4
B
126 136anti-parallel
Strand 5
B
121 122anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
63 65first strand
Strand 2
B
99 101anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
245 251first strand
Strand 2
B
190 200anti-parallel
Strand 3
B
174 180anti-parallel
Strand 4
B
164 170anti-parallel
Strand 5
D
558 559anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
184 186first strand
Strand 2
B
291 295parallel
Strand 3
B
268 280anti-parallel
Strand 4
B
261 264anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
222 237first strand
Strand 2
B
204 219anti-parallel
Strand 3
B
268 280anti-parallel
Strand 4
B
285 288anti-parallel
Strand 5
D
554 556parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
29 39first strand
Strand 2
C
46 55anti-parallel
Strand 3
C
64 70anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il