Analysis of interatomic Contacts of Structural Units in PDB entry:
5F2H


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5F2H entry

There are 2 chains in PDB entry 5F2H (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 5ASP 310
B
 MSE 5SER 312
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 30 helices in PDB entry 5F2H. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 21Right-handed alpha
Helix 2
AA2
A
22 35Right-handed alpha
Helix 3
AA3
A
40 56Right-handed alpha
Helix 4
AA4
A
57 70Right-handed alpha
Helix 5
AA5
A
77 84Right-handed alpha
Helix 6
AA6
A
85 91Right-handed 310
Helix 7
AA7
A
93 113Right-handed alpha
Helix 8
AA8
A
139 148Right-handed alpha
Helix 9
AA9
A
149 153Right-handed 310
Helix 10
AB1
A
175 193Right-handed alpha
Helix 11
AB2
A
205 217Right-handed alpha
Helix 12
AB3
A
240 242Right-handed 310
Helix 13
AB4
A
243 248Right-handed alpha
Helix 14
AB5
A
263 277Right-handed alpha
Helix 15
AB6
A
296 310Right-handed alpha
Helix 16
AB7
B
6 21Right-handed alpha
Helix 17
AB8
B
22 35Right-handed alpha
Helix 18
AB9
B
40 56Right-handed alpha
Helix 19
AC1
B
57 70Right-handed alpha
Helix 20
AC2
B
77 84Right-handed alpha
Helix 21
AC3
B
85 91Right-handed 310
Helix 22
AC4
B
93 113Right-handed alpha
Helix 23
AC5
B
139 148Right-handed alpha
Helix 24
AC6
B
149 153Right-handed 310
Helix 25
AC7
B
175 193Right-handed alpha
Helix 26
AC8
B
205 217Right-handed alpha
Helix 27
AC9
B
240 242Right-handed 310
Helix 28
AD1
B
243 248Right-handed alpha
Helix 29
AD2
B
263 277Right-handed alpha
Helix 30
AD3
B
296 309Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 5F2H. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
117 121first strand
Strand 2
B
155 161anti-parallel
Strand 3
B
128 133parallel
Strand 4
B
199 204parallel
Strand 5
B
224 228parallel
Strand 6
B
251 257parallel
Strand 7
B
281 286parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
281 286first strand
Strand 2
A
251 257parallel
Strand 3
A
224 228parallel
Strand 4
A
199 204parallel
Strand 5
A
128 133parallel
Strand 6
A
155 161parallel
Strand 7
B
117 121anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
165 167first strand
Strand 2
A
170 171anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
165 167first strand
Strand 2
B
170 171anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il