Analysis of interatomic Contacts of Structural Units in PDB entry:
5F4T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5F4T entry

There is 1 chain in PDB entry 5F4T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
CYS 22ARG 256
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 5F4T. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
22 25Right-handed 310
Helix 2
AA2
A
26 40Right-handed alpha
Helix 3
AA3
A
40 45Right-handed alpha
Helix 4
AA4
A
46 49Right-handed 310
Helix 5
AA5
A
50 62Right-handed alpha
Helix 6
AA6
A
79 101Right-handed alpha
Helix 7
AA7
A
106 133Right-handed alpha
Helix 8
AA8
A
186 190Right-handed 310
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There are 3 sheets in PDB entry 5F4T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
77 78first strand
Strand 2
A
141 148anti-parallel
Strand 3
A
153 160anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
166 173first strand
Strand 2
A
240 253parallel
Strand 3
A
229 237anti-parallel
Strand 4
A
193 201anti-parallel
Strand 5
A
207 213anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
178 181first strand
Strand 2
A
217 220anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il