Analysis of interatomic Contacts of Structural Units in PDB entry:
5F6K


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5F6K entry

There are 7 chains in PDB entry 5F6K (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ARG 286MET 503
B
SER 285MET 503
C
PRO 4754ASN 4911
D
PHE 336ILE 354
E
LEU 4755ASN 4911
F
LEU 339GLU 355
M
ARG 2ALA 7
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 5F6K. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
501 503Right-handed 310
Helix 2
AA2
B
501 503Right-handed 310
Helix 3
AA3
C
4757 4769Right-handed alpha
Helix 4
AA4
C
4807 4818Right-handed alpha
Helix 5
AA5
C
4843 4847Right-handed 310
Helix 6
AA6
E
4757 4766Right-handed alpha
Helix 7
AA7
E
4767 4771Right-handed 310
Helix 8
AA8
E
4807 4820Right-handed alpha
Helix 9
AA9
E
4842 4847Right-handed 310
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There are 16 sheets in PDB entry 5F6K. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
289 294first strand
Strand 2
A
314 318anti-parallel
Strand 3
A
469 475anti-parallel
Strand 4
A
341 347anti-parallel
Strand 5
A
363 367anti-parallel
Strand 6
A
373 375anti-parallel
Strand 7
A
378 380anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
299 300first strand
Strand 2
A
306 308anti-parallel
Strand 3
A
479 483anti-parallel
Strand 4
A
325 335anti-parallel
Strand 5
A
391 398anti-parallel
Strand 6
A
446 451anti-parallel
Strand 7
A
454 461anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
299 300first strand
Strand 2
A
306 308anti-parallel
Strand 3
A
479 483anti-parallel
Strand 4
A
325 335anti-parallel
Strand 5
A
498 499parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
289 294first strand
Strand 2
B
314 318anti-parallel
Strand 3
B
469 475anti-parallel
Strand 4
B
341 347anti-parallel
Strand 5
B
363 367anti-parallel
Strand 6
B
373 375anti-parallel
Strand 7
B
378 380anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
299 300first strand
Strand 2
B
306 308anti-parallel
Strand 3
B
479 483anti-parallel
Strand 4
B
325 335anti-parallel
Strand 5
B
391 398anti-parallel
Strand 6
B
446 451anti-parallel
Strand 7
B
454 461anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
299 300first strand
Strand 2
B
306 308anti-parallel
Strand 3
B
479 483anti-parallel
Strand 4
B
325 335anti-parallel
Strand 5
B
498 499parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
4773 4777first strand
Strand 2
C
4783 4787anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
4796 4800first strand
Strand 2
C
4865 4872anti-parallel
Strand 3
C
4855 4862anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
4826 4828first strand
Strand 2
C
4833 4841anti-parallel
Strand 3
D
337 338parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
4826 4828first strand
Strand 2
C
4833 4841anti-parallel
Strand 3
C
4802 4806anti-parallel
Strand 4
D
343 344parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
4848 4849first strand
Strand 2
C
4883 4884parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
4773 4777first strand
Strand 2
E
4783 4787anti-parallel
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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
4796 4799first strand
Strand 2
E
4865 4872anti-parallel
Strand 3
E
4855 4862anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
4826 4828first strand
Strand 2
E
4833 4836anti-parallel
Strand 3
E
4803 4806anti-parallel
Strand 4
F
343 344parallel
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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
4848 4849first strand
Strand 2
E
4883 4884parallel
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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
4897 4898first strand
Strand 2
E
4909 4910anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il