Analysis of interatomic Contacts of Structural Units in PDB entry:
5F6L

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5F6L entry

There are 3 chains in PDB entry 5F6L (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
J	PHE 336	ILE 354
B	SER 285	GLY 504
A	LEU 3814	ASN 3969

There are 4 helices in PDB entry 5F6L. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	501	504	Right-handed 310
Helix 2	AA2	A	3815	3830	Right-handed alpha
Helix 3	AA3	A	3867	3878	Right-handed alpha
Helix 4	AA4	A	3900	3905	Right-handed 310

There are 8 sheets in PDB entry 5F6L. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	337	338	first strand
Strand 2	A	3898	3899	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	343	344	first strand
Strand 2	A	3861	3864	parallel
Strand 3	A	3891	3894	anti-parallel
Strand 4	A	3884	3886	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	289	294	first strand
Strand 2	B	314	318	anti-parallel
Strand 3	B	469	475	anti-parallel
Strand 4	B	341	347	anti-parallel
Strand 5	B	363	367	anti-parallel
Strand 6	B	373	375	anti-parallel
Strand 7	B	378	380	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	299	300	first strand
Strand 2	B	306	308	anti-parallel
Strand 3	B	479	483	anti-parallel
Strand 4	B	325	335	anti-parallel
Strand 5	B	391	398	anti-parallel
Strand 6	B	446	451	anti-parallel
Strand 7	B	454	461	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	299	300	first strand
Strand 2	B	306	308	anti-parallel
Strand 3	B	479	483	anti-parallel
Strand 4	B	325	335	anti-parallel
Strand 5	B	498	499	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3831	3835	first strand
Strand 2	A	3841	3845	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3854	3857	first strand
Strand 2	A	3923	3930	anti-parallel
Strand 3	A	3913	3920	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3906	3907	first strand
Strand 2	A	3941	3942	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5F6L

Analysis of interatomic Contacts of Structural Units in PDB entry:
5F6L