Analysis of interatomic
Contacts of Structural
Units in PDB entry:
Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332).
This page provides analyses of
contacts formed by:
For analysis of ligand-protein contacts, use:
3D structure can be seen in additional window with
STING software for 5FD3 entry
There are 6 chains in PDB entry 5FD3
(CSU analysis of residue contacts immediately below table)
| Chain ID |
Initial residue | Terminal residue |
|---|
A
|
ARG 522 | HIS 643 |
B
|
ARG 522 | LEU 644 |
C
|
G 1 | T 12 |
D
|
C 1 | C 13 |
H
|
G 1 | T 12 |
I
|
C 1 | C 13 |
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There are 10
helices in PDB entry 5FD3. Click on helix of interest for
CSU analysis.
Helix
number
| Helix
ID | Chain
ID |
Initial
residue | Terminal
residue |
Helix class |
|---|
| Helix 1 |
AA1 | A
| 537 |
542 | Right-handed alpha |
| Helix 2 |
AA2 | A
| 557 |
559 | Right-handed 310 |
| Helix 3 |
AA3 | A
| 560 |
575 | Right-handed alpha |
| Helix 4 |
AA4 | A
| 611 |
616 | Right-handed alpha |
| Helix 5 |
AA5 | A
| 635 |
643 | Right-handed alpha |
| Helix 6 |
AA6 | B
| 537 |
542 | Right-handed alpha |
| Helix 7 |
AA7 | B
| 557 |
559 | Right-handed 310 |
| Helix 8 |
AA8 | B
| 560 |
575 | Right-handed alpha |
| Helix 9 |
AA9 | B
| 611 |
616 | Right-handed alpha |
| Helix 10 |
AB1 | B
| 635 |
643 | Right-handed alpha |
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There are no sheets in PDB entry
5FD3
Please mail
questions/suggestions concerning this page
to
Vladimir.Sobolev@weizmann.
ac.il