Analysis of interatomic Contacts of Structural Units in PDB entry:
5FFG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5FFG entry

There are 2 chains in PDB entry 5FFG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
PHE 1LEU 594
B
ASP 113LEU 360
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 5FFG. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
175 180Right-handed alpha
Helix 2
AA2
A
188 194Right-handed alpha
Helix 3
AA3
A
214 218Right-handed 310
Helix 4
AA4
A
245 250Right-handed alpha
Helix 5
AA5
A
366 370Right-handed 310
Helix 6
AA6
A
428 430Right-handed 310
Helix 7
AA7
A
545 549Right-handed 310
Helix 8
AA8
B
125 127Right-handed 310
Helix 9
AA9
B
128 135Right-handed alpha
Helix 10
AB1
B
137 150Right-handed alpha
Helix 11
AB2
B
172 178Right-handed alpha
Helix 12
AB3
B
202 213Right-handed alpha
Helix 13
AB4
B
224 235Right-handed alpha
Helix 14
AB5
B
235 240Right-handed alpha
Helix 15
AB6
B
259 267Right-handed 310
Helix 16
AB7
B
294 305Right-handed alpha
Helix 17
AB8
B
314 328Right-handed alpha
Helix 18
AB9
B
342 355Right-handed alpha
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There are 14 sheets in PDB entry 5FFG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
9 12first strand
Strand 2
A
432 436anti-parallel
Strand 3
A
422 427anti-parallel
Strand 4
A
408 413anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
23 26first strand
Strand 2
A
35 40anti-parallel
Strand 3
A
55 60anti-parallel
Strand 4
A
67 70anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
79 81first strand
Strand 2
A
84 85anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
87 88first strand
Strand 2
A
113 114anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
98 101first strand
Strand 2
A
104 109anti-parallel
Strand 3
A
127 132anti-parallel
Strand 4
A
135 139anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
160 163first strand
Strand 2
A
168 173anti-parallel
Strand 3
A
182 187anti-parallel
Strand 4
A
208 209anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
226 229first strand
Strand 2
A
238 243anti-parallel
Strand 3
A
252 256anti-parallel
Strand 4
A
263 268anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
280 283first strand
Strand 2
A
292 297anti-parallel
Strand 3
A
314 320anti-parallel
Strand 4
A
326 332anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
301 303first strand
Strand 2
A
309 311anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
344 348first strand
Strand 2
A
357 362anti-parallel
Strand 3
A
372 379anti-parallel
Strand 4
A
382 383anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
344 348first strand
Strand 2
A
357 362anti-parallel
Strand 3
A
372 379anti-parallel
Strand 4
A
389 392anti-parallel
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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
512 514first strand
Strand 2
A
535 543anti-parallel
Strand 3
A
473 483anti-parallel
Strand 4
A
441 451anti-parallel
Strand 5
A
578 579parallel
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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
454 456first strand
Strand 2
A
586 594parallel
Strand 3
A
556 564anti-parallel
Strand 4
A
491 499anti-parallel
Strand 5
A
521 529anti-parallel
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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
193 200first strand
Strand 2
B
153 160anti-parallel
Strand 3
B
116 123parallel
Strand 4
B
246 253parallel
Strand 5
B
307 313parallel
Strand 6
B
332 335parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il