Analysis of interatomic Contacts of Structural Units in PDB entry:
5FFO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5FFO entry

There are 4 chains in PDB entry 5FFO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
PHE 1ASP 596
B
ASP 113LEU 354
C
ASP 8SER 361
D
ILE 7GLN 147
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 57 helices in PDB entry 5FFO. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
175 180Right-handed alpha
Helix 2
AA2
A
188 194Right-handed alpha
Helix 3
AA3
A
214 218Right-handed 310
Helix 4
AA4
A
245 250Right-handed alpha
Helix 5
AA5
A
366 370Right-handed 310
Helix 6
AA6
A
545 549Right-handed 310
Helix 7
AA7
A
566 570Right-handed 310
Helix 8
AA8
B
125 129Right-handed 310
Helix 9
AA9
B
131 150Right-handed alpha
Helix 10
AB1
B
172 178Right-handed alpha
Helix 11
AB2
B
203 212Right-handed alpha
Helix 12
AB3
B
224 235Right-handed alpha
Helix 13
AB4
B
261 265Right-handed 310
Helix 14
AB5
B
294 305Right-handed alpha
Helix 15
AB6
B
314 328Right-handed alpha
Helix 16
AB7
B
340 349Right-handed alpha
Helix 17
AB8
C
9 28Right-handed alpha
Helix 18
AB9
C
45 56Right-handed alpha
Helix 19
AC1
C
108 115Right-handed alpha
Helix 20
AC2
C
171 181Right-handed alpha
Helix 21
AC3
C
235 240Right-handed alpha
Helix 22
AC4
C
252 257Right-handed alpha
Helix 23
AC5
D
11 28Right-handed alpha
Helix 24
AC6
D
45 56Right-handed alpha
Helix 25
AC7
D
110 115Right-handed alpha
Helix 26
AC8
D
117 119Right-handed 310
Helix 27
AC9
D
171 181Right-handed alpha
Helix 28
AD1
D
217 224Right-handed 310
Helix 29
AD2
E
175 180Right-handed alpha
Helix 30
AD3
E
188 194Right-handed alpha
Helix 31
AD4
E
214 218Right-handed 310
Helix 32
AD5
E
245 250Right-handed alpha
Helix 33
AD6
E
366 370Right-handed 310
Helix 34
AD7
E
428 430Right-handed 310
Helix 35
AD8
E
545 549Right-handed 310
Helix 36
AD9
E
566 570Right-handed 310
Helix 37
AE1
F
125 129Right-handed 310
Helix 38
AE2
F
131 150Right-handed alpha
Helix 39
AE3
F
172 178Right-handed alpha
Helix 40
AE4
F
203 212Right-handed alpha
Helix 41
AE5
F
224 235Right-handed alpha
Helix 42
AE6
F
261 265Right-handed 310
Helix 43
AE7
F
294 303Right-handed alpha
Helix 44
AE8
F
314 328Right-handed alpha
Helix 45
AE9
F
340 349Right-handed alpha
Helix 46
AF1
G
11 28Right-handed alpha
Helix 47
AF2
G
45 56Right-handed alpha
Helix 48
AF3
G
108 115Right-handed alpha
Helix 49
AF4
G
171 181Right-handed alpha
Helix 50
AF5
G
235 240Right-handed alpha
Helix 51
AF6
G
252 257Right-handed alpha
Helix 52
AF7
H
10 28Right-handed alpha
Helix 53
AF8
H
45 56Right-handed alpha
Helix 54
AF9
H
110 115Right-handed alpha
Helix 55
AG1
H
117 119Right-handed 310
Helix 56
AG2
H
171 181Right-handed alpha
Helix 57
AG3
H
217 224Right-handed 310
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There are 46 sheets in PDB entry 5FFO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
9 12first strand
Strand 2
A
432 436anti-parallel
Strand 3
A
422 427anti-parallel
Strand 4
A
405 413anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
23 26first strand
Strand 2
A
35 40anti-parallel
Strand 3
A
55 60anti-parallel
Strand 4
A
67 69anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
79 81first strand
Strand 2
A
84 85anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
87 88first strand
Strand 2
A
113 114anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
98 101first strand
Strand 2
A
104 109anti-parallel
Strand 3
A
127 131anti-parallel
Strand 4
A
136 139anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
161 163first strand
Strand 2
A
168 173anti-parallel
Strand 3
A
182 187anti-parallel
Strand 4
A
208 209anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
226 229first strand
Strand 2
A
238 243anti-parallel
Strand 3
A
252 256anti-parallel
Strand 4
A
263 268anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
280 283first strand
Strand 2
A
292 297anti-parallel
Strand 3
A
314 320anti-parallel
Strand 4
A
326 332anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
301 303first strand
Strand 2
A
309 311anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
344 348first strand
Strand 2
A
357 362anti-parallel
Strand 3
A
372 376anti-parallel
Strand 4
A
389 392anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
378 379first strand
Strand 2
A
382 383anti-parallel
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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
512 514first strand
Strand 2
A
535 543anti-parallel
Strand 3
A
473 484anti-parallel
Strand 4
A
441 451anti-parallel
Strand 5
A
578 579parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
521 529first strand
Strand 2
A
491 500anti-parallel
Strand 3
A
556 564anti-parallel
Strand 4
A
587 591anti-parallel
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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
193 200first strand
Strand 2
B
153 160anti-parallel
Strand 3
B
116 123parallel
Strand 4
B
246 252parallel
Strand 5
B
307 313parallel
Strand 6
B
332 335parallel
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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
168 170first strand
Strand 2
C
121 127anti-parallel
Strand 3
C
228 233anti-parallel
Strand 4
C
77 83anti-parallel
Strand 5
D
346 355anti-parallel
Strand 6
D
332 339anti-parallel
Strand 7
D
282 284anti-parallel
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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
102 107first strand
Strand 2
C
185 192anti-parallel
Strand 3
C
138 145anti-parallel
Strand 4
C
149 157anti-parallel
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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
265 267first strand
Strand 2
C
292 294anti-parallel
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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
270 271first strand
Strand 2
C
288 289anti-parallel
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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
282 284first strand
Strand 2
C
332 341anti-parallel
Strand 3
C
344 355anti-parallel
Strand 4
D
77 83anti-parallel
Strand 5
D
228 233anti-parallel
Strand 6
D
121 127anti-parallel
Strand 7
D
169 170anti-parallel
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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
326 329first strand
Strand 2
C
358 361anti-parallel
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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
101 106first strand
Strand 2
D
186 192anti-parallel
Strand 3
D
138 145anti-parallel
Strand 4
D
149 157anti-parallel
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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
265 267first strand
Strand 2
D
292 294anti-parallel
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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
326 329first strand
Strand 2
D
358 361anti-parallel
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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
9 12first strand
Strand 2
E
432 436anti-parallel
Strand 3
E
422 427anti-parallel
Strand 4
E
408 413anti-parallel
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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
23 26first strand
Strand 2
E
35 40anti-parallel
Strand 3
E
55 60anti-parallel
Strand 4
E
67 70anti-parallel
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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
79 81first strand
Strand 2
E
84 85anti-parallel
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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
87 88first strand
Strand 2
E
113 114anti-parallel
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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
98 101first strand
Strand 2
E
104 109anti-parallel
Strand 3
E
127 131anti-parallel
Strand 4
E
136 139anti-parallel
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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
161 163first strand
Strand 2
E
168 173anti-parallel
Strand 3
E
182 187anti-parallel
Strand 4
E
208 209anti-parallel
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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
226 229first strand
Strand 2
E
238 243anti-parallel
Strand 3
E
252 256anti-parallel
Strand 4
E
263 268anti-parallel
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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
280 283first strand
Strand 2
E
292 297anti-parallel
Strand 3
E
314 320anti-parallel
Strand 4
E
326 332anti-parallel
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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
301 303first strand
Strand 2
E
309 311anti-parallel
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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
344 348first strand
Strand 2
E
357 362anti-parallel
Strand 3
E
372 376anti-parallel
Strand 4
E
389 392anti-parallel
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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
378 379first strand
Strand 2
E
382 383anti-parallel
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There are 5 strands in AD8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
512 514first strand
Strand 2
E
535 543anti-parallel
Strand 3
E
473 484anti-parallel
Strand 4
E
441 451anti-parallel
Strand 5
E
578 579parallel
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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
521 529first strand
Strand 2
E
491 500anti-parallel
Strand 3
E
556 564anti-parallel
Strand 4
E
587 591anti-parallel
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There are 6 strands in AE1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
193 200first strand
Strand 2
F
153 160anti-parallel
Strand 3
F
116 123parallel
Strand 4
F
246 252parallel
Strand 5
F
307 313parallel
Strand 6
F
332 335parallel
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There are 7 strands in AE2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
168 170first strand
Strand 2
G
121 127anti-parallel
Strand 3
G
228 233anti-parallel
Strand 4
G
77 83anti-parallel
Strand 5
H
346 355anti-parallel
Strand 6
H
332 339anti-parallel
Strand 7
H
282 284anti-parallel
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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
102 107first strand
Strand 2
G
185 192anti-parallel
Strand 3
G
138 145anti-parallel
Strand 4
G
149 157anti-parallel
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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
265 267first strand
Strand 2
G
292 294anti-parallel
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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
270 271first strand
Strand 2
G
288 289anti-parallel
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There are 7 strands in AE6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
282 284first strand
Strand 2
G
332 341anti-parallel
Strand 3
G
344 355anti-parallel
Strand 4
H
77 83anti-parallel
Strand 5
H
228 233anti-parallel
Strand 6
H
121 127anti-parallel
Strand 7
H
168 170anti-parallel
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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
326 329first strand
Strand 2
G
358 361anti-parallel
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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
101 106first strand
Strand 2
H
186 192anti-parallel
Strand 3
H
138 145anti-parallel
Strand 4
H
149 157anti-parallel
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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
265 267first strand
Strand 2
H
292 294anti-parallel
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There are 2 strands in AF1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
326 329first strand
Strand 2
H
358 361anti-parallel
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