Analysis of interatomic Contacts of Structural Units in PDB entry:
5FHH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5FHH entry

There are 2 chains in PDB entry 5FHH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
PRO 205ARG 615
B
PRO 205ARG 615
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 5FHH. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
208 221Right-handed alpha
Helix 2
AA2
A
233 245Right-handed alpha
Helix 3
AA3
A
256 264Right-handed alpha
Helix 4
AA4
A
268 273Right-handed alpha
Helix 5
AA5
A
280 289Right-handed alpha
Helix 6
AA6
A
290 300Right-handed alpha
Helix 7
AA7
A
307 311Right-handed 310
Helix 8
AA8
A
312 328Right-handed alpha
Helix 9
AA9
A
359 363Right-handed 310
Helix 10
AB1
A
364 369Right-handed alpha
Helix 11
AB2
A
384 396Right-handed alpha
Helix 12
AB3
A
404 409Right-handed alpha
Helix 13
AB4
A
410 413Right-handed 310
Helix 14
AB5
A
430 443Right-handed alpha
Helix 15
AB6
A
459 464Right-handed alpha
Helix 16
AB7
A
517 519Right-handed 310
Helix 17
AB8
A
555 558Right-handed 310
Helix 18
AB9
A
576 584Right-handed alpha
Helix 19
AC1
A
586 591Right-handed alpha
Helix 20
AC2
A
607 613Right-handed alpha
Helix 21
AC3
B
208 220Right-handed alpha
Helix 22
AC4
B
234 245Right-handed alpha
Helix 23
AC5
B
256 264Right-handed alpha
Helix 24
AC6
B
268 273Right-handed alpha
Helix 25
AC7
B
280 289Right-handed alpha
Helix 26
AC8
B
293 299Right-handed alpha
Helix 27
AC9
B
307 311Right-handed 310
Helix 28
AD1
B
312 327Right-handed alpha
Helix 29
AD2
B
331 336Right-handed 310
Helix 30
AD3
B
364 369Right-handed alpha
Helix 31
AD4
B
384 397Right-handed alpha
Helix 32
AD5
B
400 409Right-handed alpha
Helix 33
AD6
B
410 412Right-handed 310
Helix 34
AD7
B
428 443Right-handed alpha
Helix 35
AD8
B
460 465Right-handed alpha
Helix 36
AD9
B
518 520Right-handed 310
Helix 37
AE1
B
553 558Right-handed alpha
Helix 38
AE2
B
576 584Right-handed alpha
Helix 39
AE3
B
607 612Right-handed alpha
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There are 11 sheets in PDB entry 5FHH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
250 252first strand
Strand 2
A
302 304parallel
Strand 3
A
337 341parallel
Strand 4
A
224 228parallel
Strand 5
A
372 376parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
551 553first strand
Strand 2
A
423 426parallel
Strand 3
A
565 567parallel
Strand 4
A
592 593parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
481 482first strand
Strand 2
A
547 548anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
514 515first strand
Strand 2
A
521 522anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
529 530first strand
Strand 2
A
540 541anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
225 227first strand
Strand 2
B
373 375parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
302 303first strand
Strand 2
B
337 338parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
448 449first strand
Strand 2
B
474 475anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
480 481first strand
Strand 2
B
496 497anti-parallel
Strand 3
B
515 516anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
527 531first strand
Strand 2
B
539 543anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
566 567first strand
Strand 2
B
592 593parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il