Analysis of interatomic Contacts of Structural Units in PDB entry:
5FM5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5FM5 entry

There are 4 chains in PDB entry 5FM5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
M
 PRO 510PRO 632
N
 PRO 510PRO 632
O
 PRO 243PRO 339
P
 GLY 242PRO 339
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 5FM5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
M
606 615Right-handed alpha
Helix 2
2
N
606 615Right-handed alpha
Helix 3
3
O
310 314Right-handed 310
Helix 4
4
P
310 314Right-handed 310
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There are 14 sheets in PDB entry 5FM5. Click on sheet of interest to get list of strands forming it: MA, MB, MC, MD, ME, MF, NA, NB, NC, ND, NE, NF, OA, PA,

There are 3 strands in MA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
514 521first strand
Strand 2
M
526 531anti-parallel
Strand 3
M
568 571anti-parallel
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There are 4 strands in MB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
556 558first strand
Strand 2
M
543 550anti-parallel
Strand 3
M
579 588anti-parallel
Strand 4
M
591 595anti-parallel
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There are 4 strands in MC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
556 558first strand
Strand 2
M
543 550anti-parallel
Strand 3
M
579 588anti-parallel
Strand 4
M
602 603anti-parallel
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There are 2 strands in MD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
591 595first strand
Strand 2
M
579 588anti-parallel
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There are 2 strands in ME sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
621 622first strand
Strand 2
P
269 270anti-parallel
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There are 4 strands in MF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
626 630first strand
Strand 2
P
262 267anti-parallel
Strand 3
P
302 306anti-parallel
Strand 4
P
292 296anti-parallel
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There are 3 strands in NA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
514 521first strand
Strand 2
N
526 531anti-parallel
Strand 3
N
568 571anti-parallel
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There are 4 strands in NB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
556 558first strand
Strand 2
N
543 550anti-parallel
Strand 3
N
579 587anti-parallel
Strand 4
N
592 595anti-parallel
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There are 4 strands in NC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
556 558first strand
Strand 2
N
543 550anti-parallel
Strand 3
N
579 587anti-parallel
Strand 4
N
602 603anti-parallel
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There are 2 strands in ND sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
592 595first strand
Strand 2
N
579 587anti-parallel
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There are 2 strands in NE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
618 622first strand
Strand 2
O
269 272anti-parallel
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There are 4 strands in NF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
626 630first strand
Strand 2
O
262 267anti-parallel
Strand 3
O
302 306anti-parallel
Strand 4
O
292 296anti-parallel
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There are 5 strands in OA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
254 258first strand
Strand 2
O
327 337parallel
Strand 3
O
315 322anti-parallel
Strand 4
O
276 281anti-parallel
Strand 5
O
284 285anti-parallel
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There are 5 strands in PA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
P
254 258first strand
Strand 2
P
327 337parallel
Strand 3
P
315 322anti-parallel
Strand 4
P
276 281anti-parallel
Strand 5
P
284 285anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il