Analysis of interatomic Contacts of Structural Units in PDB entry:
5FOB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5FOB entry

There are 2 chains in PDB entry 5FOB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
SER 23GLN 664
B
GLU 753TYR 1392
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 5FOB. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
77 81Right-handed 310
Helix 2
2
A
303 311Right-handed alpha
Helix 3
3
A
315 320Right-handed 310
Helix 4
4
A
448 452Right-handed 310
Helix 5
5
A
483 487Right-handed 310
Helix 6
6
A
522 526Right-handed 310
Helix 7
7
A
600 606Right-handed alpha
Helix 8
8
A
612 623Right-handed alpha
Helix 9
9
A
634 642Right-handed alpha
Helix 10
10
B
757 761Right-handed 310
Helix 11
11
B
948 953Right-handed alpha
Helix 12
12
B
996 1004Right-handed 310
Helix 13
13
B
1010 1032Right-handed alpha
Helix 14
14
B
1033 1038Right-handed alpha
Helix 15
15
B
1040 1057Right-handed alpha
Helix 16
16
B
1075 1089Right-handed alpha
Helix 17
17
B
1096 1112Right-handed alpha
Helix 18
18
B
1126 1135Right-handed 310
Helix 19
19
B
1138 1159Right-handed alpha
Helix 20
20
B
1164 1180Right-handed alpha
Helix 21
21
B
1181 1183Right-handed 310
Helix 22
22
B
1185 1199Right-handed alpha
Helix 23
23
B
1203 1214Right-handed alpha
Helix 24
24
B
1225 1244Right-handed alpha
Helix 25
25
B
1248 1260Right-handed alpha
Helix 26
26
B
1268 1286Right-handed alpha
Helix 27
27
B
1414 1424Right-handed alpha
Helix 28
28
B
1430 1436Right-handed alpha
Helix 29
29
B
1528 1537Right-handed alpha
Helix 30
30
B
1589 1591Right-handed 310
Helix 31
31
B
1633 1639Right-handed alpha
Helix 32
32
B
1642 1659Right-handed alpha
Helix 33
33
C
35 41Right-handed alpha
Helix 34
34
C
130 132Right-handed 310
Helix 35
35
C
249 253Right-handed 310
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There are 30 sheets in PDB entry 5FOB. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, BA, BB, BC, BD, BE, BF, BG, BH, BI, BJ, BK, BL, CA, CB, CC, CD, CE, CF, CG,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
83 89first strand
Strand 2
A
39 47anti-parallel
Strand 3
A
25 31anti-parallel
Strand 4
A
644 648anti-parallel
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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
33 35first strand
Strand 2
A
115 124parallel
Strand 3
A
104 112anti-parallel
Strand 4
A
53 62anti-parallel
Strand 5
A
68 76anti-parallel
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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
129 134first strand
Strand 2
A
144 152anti-parallel
Strand 3
A
188 194anti-parallel
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There are 5 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
138 139first strand
Strand 2
A
218 224parallel
Strand 3
A
202 210anti-parallel
Strand 4
A
162 168anti-parallel
Strand 5
A
174 181anti-parallel
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There are 3 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
232 238first strand
Strand 2
A
251 259anti-parallel
Strand 3
A
297 302anti-parallel
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There are 5 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
243 244first strand
Strand 2
A
338 349parallel
Strand 3
A
323 332anti-parallel
Strand 4
A
267 277anti-parallel
Strand 5
A
280 293anti-parallel
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There are 3 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
354 356first strand
Strand 2
A
370 377anti-parallel
Strand 3
A
406 411anti-parallel
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There are 4 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
363 364first strand
Strand 2
A
438 445parallel
Strand 3
A
420 426anti-parallel
Strand 4
A
389 392anti-parallel
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There are 3 strands in AI sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
455 460first strand
Strand 2
A
470 478anti-parallel
Strand 3
A
514 520anti-parallel
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There are 4 strands in AJ sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
499 507first strand
Strand 2
A
489 496anti-parallel
Strand 3
A
528 538anti-parallel
Strand 4
A
544 554anti-parallel
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There are 3 strands in AK sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
563 567first strand
Strand 2
A
580 588anti-parallel
Strand 3
B
786 794anti-parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
770 771first strand
Strand 2
A
592 599anti-parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
775 777first strand
Strand 2
A
592 599anti-parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
814 817first strand
Strand 2
B
800 810anti-parallel
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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
821 825first strand
Strand 2
B
800 810anti-parallel
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There are 4 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
829 834first strand
Strand 2
B
845 853anti-parallel
Strand 3
B
892 902anti-parallel
Strand 4
B
872 873anti-parallel
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There are 5 strands in BF sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
838 840first strand
Strand 2
B
922 932parallel
Strand 3
B
906 916anti-parallel
Strand 4
B
860 866anti-parallel
Strand 5
B
882 888anti-parallel
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There are 4 strands in BG sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
936 947first strand
Strand 2
B
1340 1350anti-parallel
Strand 3
B
977 984anti-parallel
Strand 4
B
1320 1324anti-parallel
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There are 4 strands in BH sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
957 962first strand
Strand 2
B
1330 1337anti-parallel
Strand 3
B
1293 1299anti-parallel
Strand 4
B
1307 1312anti-parallel
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There are 4 strands in BI sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
1361 1369first strand
Strand 2
B
1382 1392anti-parallel
Strand 3
B
1457 1465anti-parallel
Strand 4
B
1411 1413anti-parallel
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There are 5 strands in BJ sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
1427 1428first strand
Strand 2
B
1443 1448anti-parallel
Strand 3
B
1401 1406anti-parallel
Strand 4
B
1475 1481anti-parallel
Strand 5
B
1489 1493anti-parallel
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There are 2 strands in BK sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
1504 1507first strand
Strand 2
B
1510 1513anti-parallel
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There are 7 strands in BL sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
1611 1612first strand
Strand 2
B
1619 1621anti-parallel
Strand 3
B
1581 1587parallel
Strand 4
B
1558 1570anti-parallel
Strand 5
B
1541 1554anti-parallel
Strand 6
B
1601 1607anti-parallel
Strand 7
B
1627 1631anti-parallel
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There are 4 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
30 32first strand
Strand 2
C
49 54anti-parallel
Strand 3
C
66 71anti-parallel
Strand 4
C
74 78anti-parallel
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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
58 60first strand
Strand 2
C
81 83anti-parallel
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There are 4 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
95 99first strand
Strand 2
C
107 112anti-parallel
Strand 3
C
123 129anti-parallel
Strand 4
C
133 137anti-parallel
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There are 2 strands in CD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
116 119first strand
Strand 2
C
142 145anti-parallel
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There are 3 strands in CE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
171 173first strand
Strand 2
C
187 191anti-parallel
Strand 3
C
194 195anti-parallel
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There are 2 strands in CF sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
181 183first strand
Strand 2
C
200 202anti-parallel
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There are 2 strands in CG sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
229 230first strand
Strand 2
C
246 247anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il