Analysis of interatomic Contacts of Structural Units in PDB entry:
5FWS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5FWS entry

There is 1 chain in PDB entry 5FWS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
PRO 30LYS 322
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 3 helices in PDB entry 5FWS. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
71 78Right-handed 310
Helix 2
2
A
143 154Right-handed alpha
Helix 3
3
A
182 186Right-handed 310
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There are 5 sheets in PDB entry 5FWS. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
94 96first strand
Strand 2
A
106 108anti-parallel
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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
119 124first strand
Strand 2
A
203 208anti-parallel
Strand 3
A
158 162anti-parallel
Strand 4
A
166 170anti-parallel
Strand 5
A
135 138anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
189 190first strand
Strand 2
A
193 197anti-parallel
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There are 5 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
216 218first strand
Strand 2
A
239 245parallel
Strand 3
A
298 304anti-parallel
Strand 4
A
267 272anti-parallel
Strand 5
A
278 283anti-parallel
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There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
222 226first strand
Strand 2
A
313 321anti-parallel
Strand 3
A
251 260anti-parallel
Strand 4
A
291 294anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il