Analysis of interatomic Contacts of Structural Units in PDB entry:
5FXY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5FXY entry

There are 8 chains in PDB entry 5FXY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 10	ASP 411
B	ARG 468	ARG 546
C	ASP 10	ASP 411
D	ARG 468	ARG 546
E	ASP 10	ASP 411
F	GLN 469	ARG 546
G	ASP 10	ASP 411
H	ARG 468	ARG 546

There are 36 helices in PDB entry 5FXY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	10	31	Right-handed alpha
Helix 2	2	A	348	350	Right-handed 310
Helix 3	3	A	355	362	Right-handed alpha
Helix 4	4	A	405	410	Right-handed alpha
Helix 5	5	B	476	486	Right-handed alpha
Helix 6	6	B	486	491	Right-handed alpha
Helix 7	7	B	491	496	Right-handed alpha
Helix 8	8	B	504	515	Right-handed alpha
Helix 9	9	B	533	544	Right-handed alpha
Helix 10	10	C	10	31	Right-handed alpha
Helix 11	11	C	348	350	Right-handed 310
Helix 12	12	C	355	362	Right-handed alpha
Helix 13	13	C	405	410	Right-handed alpha
Helix 14	14	D	476	486	Right-handed alpha
Helix 15	15	D	486	491	Right-handed alpha
Helix 16	16	D	491	496	Right-handed alpha
Helix 17	17	D	504	515	Right-handed alpha
Helix 18	18	D	533	544	Right-handed alpha
Helix 19	19	E	11	31	Right-handed alpha
Helix 20	20	E	348	350	Right-handed 310
Helix 21	21	E	355	362	Right-handed alpha
Helix 22	22	E	405	410	Right-handed alpha
Helix 23	23	F	476	486	Right-handed alpha
Helix 24	24	F	486	491	Right-handed alpha
Helix 25	25	F	491	496	Right-handed alpha
Helix 26	26	F	504	515	Right-handed alpha
Helix 27	27	F	533	544	Right-handed alpha
Helix 28	28	G	10	31	Right-handed alpha
Helix 29	29	G	348	350	Right-handed 310
Helix 30	30	G	355	362	Right-handed alpha
Helix 31	31	G	405	410	Right-handed alpha
Helix 32	32	H	476	486	Right-handed alpha
Helix 33	33	H	486	491	Right-handed alpha
Helix 34	34	H	491	496	Right-handed alpha
Helix 35	35	H	504	515	Right-handed alpha
Helix 36	36	H	533	544	Right-handed alpha

There are 28 sheets in PDB entry 5FXY. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, CA, CB, CC, CD, CE, CF, CG, EA, EB, EC, ED, EE, EF, EG, GA, GB, GC, GD, GE, GF, GG,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	377	382	first strand
Strand 2	A	389	394	anti-parallel
Strand 3	A	398	404	anti-parallel
Strand 4	A	32	39	anti-parallel
Strand 5	B	472	474	anti-parallel

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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	54	first strand
Strand 2	A	61	66	anti-parallel
Strand 3	A	77	87	anti-parallel
Strand 4	A	116	123	anti-parallel

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There are 5 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	129	132	first strand
Strand 2	A	139	143	anti-parallel
Strand 3	A	149	153	anti-parallel
Strand 4	A	171	173	anti-parallel
Strand 5	A	216	217	parallel

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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	183	185	first strand
Strand 2	A	192	196	anti-parallel
Strand 3	A	202	206	anti-parallel
Strand 4	A	221	223	anti-parallel

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There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	230	235	first strand
Strand 2	A	242	247	anti-parallel
Strand 3	A	251	256	anti-parallel
Strand 4	A	267	270	anti-parallel

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There are 4 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	276	281	first strand
Strand 2	A	288	293	anti-parallel
Strand 3	A	297	302	anti-parallel
Strand 4	A	311	314	anti-parallel

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There are 4 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	320	325	first strand
Strand 2	A	332	337	anti-parallel
Strand 3	A	342	346	anti-parallel
Strand 4	A	366	370	anti-parallel

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There are 6 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	108	109	first strand
Strand 2	D	471	474	anti-parallel
Strand 3	C	32	39	anti-parallel
Strand 4	C	398	404	anti-parallel
Strand 5	C	389	394	anti-parallel
Strand 6	C	377	382	anti-parallel

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There are 3 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	61	69	first strand
Strand 2	C	77	87	anti-parallel
Strand 3	C	115	123	anti-parallel

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There are 5 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	129	132	first strand
Strand 2	C	139	143	anti-parallel
Strand 3	C	149	153	anti-parallel
Strand 4	C	171	173	anti-parallel
Strand 5	C	216	217	parallel

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There are 4 strands in CD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	183	185	first strand
Strand 2	C	192	196	anti-parallel
Strand 3	C	202	206	anti-parallel
Strand 4	C	221	223	anti-parallel

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There are 4 strands in CE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	230	235	first strand
Strand 2	C	242	247	anti-parallel
Strand 3	C	251	256	anti-parallel
Strand 4	C	267	270	anti-parallel

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There are 4 strands in CF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	276	281	first strand
Strand 2	C	288	293	anti-parallel
Strand 3	C	297	302	anti-parallel
Strand 4	C	311	314	anti-parallel

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There are 4 strands in CG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	320	325	first strand
Strand 2	C	332	337	anti-parallel
Strand 3	C	342	346	anti-parallel
Strand 4	C	366	369	anti-parallel

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There are 5 strands in EA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	377	382	first strand
Strand 2	E	389	394	anti-parallel
Strand 3	E	398	404	anti-parallel
Strand 4	E	32	39	anti-parallel
Strand 5	F	471	474	anti-parallel

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There are 3 strands in EB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	61	68	first strand
Strand 2	E	78	87	anti-parallel
Strand 3	E	116	122	anti-parallel

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There are 5 strands in EC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	129	132	first strand
Strand 2	E	139	143	anti-parallel
Strand 3	E	149	153	anti-parallel
Strand 4	E	171	173	anti-parallel
Strand 5	E	216	217	parallel

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There are 4 strands in ED sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	183	185	first strand
Strand 2	E	192	196	anti-parallel
Strand 3	E	202	206	anti-parallel
Strand 4	E	221	223	anti-parallel

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There are 4 strands in EE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	230	235	first strand
Strand 2	E	242	247	anti-parallel
Strand 3	E	251	256	anti-parallel
Strand 4	E	267	270	anti-parallel

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There are 4 strands in EF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	276	281	first strand
Strand 2	E	288	293	anti-parallel
Strand 3	E	297	302	anti-parallel
Strand 4	E	311	314	anti-parallel

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There are 4 strands in EG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	320	325	first strand
Strand 2	E	332	337	anti-parallel
Strand 3	E	342	346	anti-parallel
Strand 4	E	366	370	anti-parallel

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There are 5 strands in GA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	377	382	first strand
Strand 2	G	389	394	anti-parallel
Strand 3	G	398	404	anti-parallel
Strand 4	G	32	39	anti-parallel
Strand 5	H	472	474	anti-parallel

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There are 3 strands in GB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	61	65	first strand
Strand 2	G	78	87	anti-parallel
Strand 3	G	117	122	anti-parallel

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There are 5 strands in GC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	129	132	first strand
Strand 2	G	140	143	anti-parallel
Strand 3	G	149	151	anti-parallel
Strand 4	G	171	173	anti-parallel
Strand 5	G	216	217	parallel

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There are 4 strands in GD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	183	185	first strand
Strand 2	G	192	196	anti-parallel
Strand 3	G	202	206	anti-parallel
Strand 4	G	221	223	anti-parallel

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There are 4 strands in GE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	230	235	first strand
Strand 2	G	242	247	anti-parallel
Strand 3	G	252	256	anti-parallel
Strand 4	G	267	269	anti-parallel

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There are 4 strands in GF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	276	281	first strand
Strand 2	G	288	293	anti-parallel
Strand 3	G	297	302	anti-parallel
Strand 4	G	311	314	anti-parallel

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There are 4 strands in GG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	320	325	first strand
Strand 2	G	332	337	anti-parallel
Strand 3	G	343	346	anti-parallel
Strand 4	G	366	369	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5FXY

Analysis of interatomic Contacts of Structural Units in PDB entry:
5FXY