Analysis of interatomic Contacts of Structural Units in PDB entry:
5GJK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5GJK entry

There are 2 chains in PDB entry 5GJK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 446ASP 539
B
 ALA 182PRO 249
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 5GJK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
451 455Right-handed 310
Helix 2
AA2
A
463 470Right-handed alpha
Helix 3
AA3
A
471 474Right-handed 310
Helix 4
AA4
A
482 500Right-handed alpha
Helix 5
AA5
A
506 512Right-handed alpha
Helix 6
AA6
A
517 531Right-handed alpha
Helix 7
AA7
B
214 227Right-handed alpha
Helix 8
AA8
B
229 248Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 5GJK.

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
186 195first strand
Strand 2
B
198 207anti-parallel
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