Analysis of interatomic Contacts of Structural Units in PDB entry:
5GKF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5GKF entry

There are 4 chains in PDB entry 5GKF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2ARG 240
B
 SER 2ARG 240
C
 DC 1 DC 15
D
 DG 1 DG 15
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 5GKF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 28Right-handed alpha
Helix 2
AA2
A
131 142Right-handed alpha
Helix 3
AA3
A
143 146Right-handed 310
Helix 4
AA4
A
186 205Right-handed alpha
Helix 5
AA5
A
218 228Right-handed alpha
Helix 6
AA6
B
13 28Right-handed alpha
Helix 7
AA7
B
131 142Right-handed alpha
Helix 8
AA8
B
143 146Right-handed 310
Helix 9
AA9
B
186 205Right-handed alpha
Helix 10
AB1
B
218 228Right-handed alpha
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There are 6 sheets in PDB entry 5GKF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 10first strand
Strand 2
A
103 118anti-parallel
Strand 3
A
30 42anti-parallel
Strand 4
A
46 58anti-parallel
Strand 5
A
92 98first strand
Strand 6
A
83 88anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 78first strand
Strand 2
A
64 67anti-parallel
Strand 3
A
46 58anti-parallel
Strand 4
A
30 42anti-parallel
Strand 5
A
103 118anti-parallel
Strand 6
B
127 129first strand
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 129first strand
Strand 2
B
46 58anti-parallel
Strand 3
B
30 42anti-parallel
Strand 4
B
103 118anti-parallel
Strand 5
B
64 67first strand
Strand 6
B
76 78anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 10first strand
Strand 2
B
103 118anti-parallel
Strand 3
B
30 42anti-parallel
Strand 4
B
46 58anti-parallel
Strand 5
B
92 98first strand
Strand 6
B
83 88anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 158first strand
Strand 2
A
163 170anti-parallel
Strand 3
A
175 180anti-parallel
Strand 4
A
208 214parallel
Strand 5
A
231 234parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
151 158first strand
Strand 2
B
163 169anti-parallel
Strand 3
B
175 180anti-parallel
Strand 4
B
209 214parallel
Strand 5
B
231 234parallel
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