Analysis of interatomic Contacts of Structural Units in PDB entry:
5GLH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5GLH entry

There are 2 chains in PDB entry 5GLH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
PRO 88LEU 401
B
CYS 1TRP 21
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 5GLH. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
97 129Right-handed alpha
Helix 2
AA2
A
136 155Right-handed alpha
Helix 3
AA3
A
155 164Right-handed alpha
Helix 4
AA4
A
170 205Right-handed alpha
Helix 5
AA5
A
218 239Right-handed alpha
Helix 6
AA6
A
263 281Right-handed alpha
Helix 7
AA7
A
282 1012Right-handed alpha
Helix 8
AA8
A
1038 1051Right-handed alpha
Helix 9
AA9
A
1059 1081Right-handed alpha
Helix 10
AB1
A
1084 1091Right-handed alpha
Helix 11
AB2
A
1092 1112Right-handed alpha
Helix 12
AB3
A
1114 1123Right-handed alpha
Helix 13
AB4
A
1125 1134Right-handed alpha
Helix 14
AB5
A
1136 1142Right-handed alpha
Helix 15
AB6
A
1142 1156Right-handed alpha
Helix 16
AB7
A
312 326Right-handed alpha
Helix 17
AB8
A
326 336Right-handed alpha
Helix 18
AB9
A
336 350Right-handed alpha
Helix 19
AC1
A
356 391Right-handed alpha
Helix 20
AC2
A
391 399Right-handed alpha
Helix 21
AC3
B
8 18Right-handed alpha
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There are 2 sheets in PDB entry 5GLH. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
240 247first strand
Strand 2
A
250 257anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1014 1019first strand
Strand 2
A
1025 1028anti-parallel
Strand 3
A
1031 1032anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il