Analysis of interatomic Contacts of Structural Units in PDB entry:
5GRH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5GRH entry

There are 2 chains in PDB entry 5GRH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 3ASP 337
B
 GLY 14ASN 348
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 29 helices in PDB entry 5GRH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 30Right-handed alpha
Helix 2
AA2
A
54 65Right-handed alpha
Helix 3
AA3
A
82 92Right-handed alpha
Helix 4
AA4
A
146 163Right-handed alpha
Helix 5
AA5
A
177 194Right-handed alpha
Helix 6
AA6
A
205 215Right-handed alpha
Helix 7
AA7
A
216 219Right-handed 310
Helix 8
AA8
A
230 240Right-handed alpha
Helix 9
AA9
A
242 245Right-handed 310
Helix 10
AB1
A
253 255Right-handed 310
Helix 11
AB2
A
266 270Right-handed 310
Helix 12
AB3
A
277 292Right-handed alpha
Helix 13
AB4
A
293 311Right-handed alpha
Helix 14
AB5
A
315 319Right-handed 310
Helix 15
AB6
A
323 337Right-handed alpha
Helix 16
AB7
B
26 42Right-handed alpha
Helix 17
AB8
B
58 72Right-handed alpha
Helix 18
AB9
B
91 100Right-handed alpha
Helix 19
AC1
B
155 173Right-handed alpha
Helix 20
AC2
B
188 204Right-handed alpha
Helix 21
AC3
B
214 224Right-handed alpha
Helix 22
AC4
B
225 228Right-handed 310
Helix 23
AC5
B
236 238Right-handed 310
Helix 24
AC6
B
239 250Right-handed alpha
Helix 25
AC7
B
275 279Right-handed 310
Helix 26
AC8
B
286 300Right-handed alpha
Helix 27
AC9
B
302 319Right-handed alpha
Helix 28
AD1
B
324 328Right-handed 310
Helix 29
AD2
B
332 348Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 5GRH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 38first strand
Strand 2
A
5 10parallel
Strand 3
A
66 69parallel
Strand 4
A
257 261parallel
Strand 5
A
247 251anti-parallel
Strand 6
A
95 101anti-parallel
Strand 7
A
114 120anti-parallel
Strand 8
A
221 224parallel
Strand 9
A
167 172parallel
Strand 10
A
199 204parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
129 134first strand
Strand 2
A
137 145anti-parallel
Strand 3
B
146 154anti-parallel
Strand 4
B
133 143anti-parallel
Back to list of sheets
Back to top of page

There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
45 49first strand
Strand 2
B
16 21parallel
Strand 3
B
73 76parallel
Strand 4
B
265 269parallel
Strand 5
B
256 260anti-parallel
Strand 6
B
104 110anti-parallel
Strand 7
B
123 129anti-parallel
Strand 8
B
230 233parallel
Strand 9
B
176 181parallel
Strand 10
B
208 213parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il