Analysis of interatomic Contacts of Structural Units in PDB entry:
5GS9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5GS9 entry

There are 4 chains in PDB entry 5GS9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
MET 1GLN 324
B
MET 1ARG 323
C
MET 1ARG 323
D
MET 1ARG 323
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 5GS9. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
19 33Right-handed alpha
Helix 2
AA2
A
34 37Right-handed 310
Helix 3
AA3
A
57 61Right-handed alpha
Helix 4
AA4
A
92 98Right-handed 310
Helix 5
AA5
A
101 108Right-handed alpha
Helix 6
AA6
A
129 138Right-handed alpha
Helix 7
AA7
A
190 192Right-handed 310
Helix 8
AA8
A
193 207Right-handed alpha
Helix 9
AA9
A
243 247Right-handed alpha
Helix 10
AB1
A
279 291Right-handed alpha
Helix 11
AB2
A
312 321Right-handed alpha
Helix 12
AB3
B
18 22Right-handed 310
Helix 13
AB4
B
23 33Right-handed alpha
Helix 14
AB5
B
34 37Right-handed 310
Helix 15
AB6
B
57 61Right-handed alpha
Helix 16
AB7
B
93 98Right-handed 310
Helix 17
AB8
B
101 108Right-handed alpha
Helix 18
AB9
B
129 138Right-handed alpha
Helix 19
AC1
B
190 196Right-handed 310
Helix 20
AC2
B
197 207Right-handed alpha
Helix 21
AC3
B
243 247Right-handed alpha
Helix 22
AC4
B
279 291Right-handed alpha
Helix 23
AC5
B
312 321Right-handed alpha
Helix 24
AC6
C
17 22Right-handed 310
Helix 25
AC7
C
23 33Right-handed alpha
Helix 26
AC8
C
57 61Right-handed alpha
Helix 27
AC9
C
101 108Right-handed alpha
Helix 28
AD1
C
129 138Right-handed alpha
Helix 29
AD2
C
190 196Right-handed 310
Helix 30
AD3
C
197 207Right-handed alpha
Helix 31
AD4
C
243 247Right-handed alpha
Helix 32
AD5
C
281 291Right-handed alpha
Helix 33
AD6
C
312 321Right-handed alpha
Helix 34
AD7
D
18 22Right-handed 310
Helix 35
AD8
D
23 33Right-handed alpha
Helix 36
AD9
D
57 61Right-handed alpha
Helix 37
AE1
D
101 108Right-handed alpha
Helix 38
AE2
D
129 138Right-handed alpha
Helix 39
AE3
D
193 207Right-handed alpha
Helix 40
AE4
D
243 247Right-handed alpha
Helix 41
AE5
D
279 291Right-handed alpha
Helix 42
AE6
D
312 321Right-handed alpha
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There are 12 sheets in PDB entry 5GS9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
69 71first strand
Strand 2
A
2 16anti-parallel
Strand 3
A
142 147parallel
Strand 4
A
150 153anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
112 116first strand
Strand 2
A
121 126anti-parallel
Strand 3
A
76 81anti-parallel
Strand 4
A
2 16anti-parallel
Strand 5
A
50 56anti-parallel
Strand 6
A
41 46anti-parallel
Strand 7
A
228 233anti-parallel
Strand 8
A
236 242anti-parallel
Strand 9
A
184 187anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
177 178first strand
Strand 2
A
263 268anti-parallel
Strand 3
A
304 309anti-parallel
Strand 4
A
296 299anti-parallel
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There are 11 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
69 71first strand
Strand 2
B
2 16anti-parallel
Strand 3
B
50 56anti-parallel
Strand 4
B
41 46anti-parallel
Strand 5
B
76 82first strand
Strand 6
B
121 126anti-parallel
Strand 7
B
112 116anti-parallel
Strand 8
B
296 299anti-parallel
Strand 9
B
304 309anti-parallel
Strand 10
B
263 268anti-parallel
Strand 11
B
177 178anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
76 82first strand
Strand 2
B
2 16anti-parallel
Strand 3
B
142 147parallel
Strand 4
B
150 153anti-parallel
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There are 10 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
150 153first strand
Strand 2
B
142 147anti-parallel
Strand 3
B
2 16parallel
Strand 4
B
50 56anti-parallel
Strand 5
B
41 46anti-parallel
Strand 6
B
228 233anti-parallel
Strand 7
B
236 242anti-parallel
Strand 8
B
183 189anti-parallel
Strand 9
B
263 268anti-parallel
Strand 10
B
304 309anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
69 71first strand
Strand 2
C
2 15anti-parallel
Strand 3
C
142 147parallel
Strand 4
C
150 153anti-parallel
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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
112 116first strand
Strand 2
C
121 126anti-parallel
Strand 3
C
76 82anti-parallel
Strand 4
C
2 15anti-parallel
Strand 5
C
51 56anti-parallel
Strand 6
C
41 46anti-parallel
Strand 7
C
228 233anti-parallel
Strand 8
C
236 242anti-parallel
Strand 9
C
184 189anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
177 178first strand
Strand 2
C
263 268anti-parallel
Strand 3
C
304 309anti-parallel
Strand 4
C
296 299anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
69 71first strand
Strand 2
D
2 16anti-parallel
Strand 3
D
142 147parallel
Strand 4
D
150 153anti-parallel
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There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
112 116first strand
Strand 2
D
121 126anti-parallel
Strand 3
D
76 82anti-parallel
Strand 4
D
2 16anti-parallel
Strand 5
D
50 56anti-parallel
Strand 6
D
41 46anti-parallel
Strand 7
D
228 233anti-parallel
Strand 8
D
236 242anti-parallel
Strand 9
D
184 188anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
177 178first strand
Strand 2
D
263 268anti-parallel
Strand 3
D
304 309anti-parallel
Strand 4
D
296 299anti-parallel
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