Analysis of interatomic Contacts of Structural Units in PDB entry:
5GT9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5GT9 entry

There are 2 chains in PDB entry 5GT9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ARG 262
B
 MET 1ASP 263
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 5GT9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 8Right-handed alpha
Helix 2
AA2
A
18 31Right-handed alpha
Helix 3
AA3
A
41 57Right-handed alpha
Helix 4
AA4
A
71 80Right-handed alpha
Helix 5
AA5
A
99 103Right-handed 310
Helix 6
AA6
A
104 116Right-handed alpha
Helix 7
AA7
A
116 134Right-handed alpha
Helix 8
AA8
A
144 149Right-handed alpha
Helix 9
AA9
A
153 175Right-handed alpha
Helix 10
AB1
A
191 196Right-handed alpha
Helix 11
AB2
A
202 209Right-handed alpha
Helix 12
AB3
A
213 225Right-handed alpha
Helix 13
AB4
A
234 248Right-handed alpha
Helix 14
AB5
A
249 259Right-handed alpha
Helix 15
AB6
B
18 31Right-handed alpha
Helix 16
AB7
B
41 57Right-handed alpha
Helix 17
AB8
B
71 81Right-handed alpha
Helix 18
AB9
B
99 103Right-handed 310
Helix 19
AC1
B
104 116Right-handed alpha
Helix 20
AC2
B
116 134Right-handed alpha
Helix 21
AC3
B
144 149Right-handed alpha
Helix 22
AC4
B
153 174Right-handed alpha
Helix 23
AC5
B
191 196Right-handed alpha
Helix 24
AC6
B
201 209Right-handed alpha
Helix 25
AC7
B
213 225Right-handed alpha
Helix 26
AC8
B
234 248Right-handed alpha
Helix 27
AC9
B
249 258Right-handed alpha
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There are 2 sheets in PDB entry 5GT9. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 64first strand
Strand 2
A
34 39parallel
Strand 3
A
10 14parallel
Strand 4
A
85 90parallel
Strand 5
A
136 143parallel
Strand 6
A
179 186parallel
Strand 7
A
230 232parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 64first strand
Strand 2
B
34 39parallel
Strand 3
B
10 14parallel
Strand 4
B
85 90parallel
Strand 5
B
136 143parallel
Strand 6
B
179 186parallel
Strand 7
B
230 232parallel
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