Analysis of interatomic Contacts of Structural Units in PDB entry:
5GUG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5GUG entry

There are 2 chains in PDB entry 5GUG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 6	PHE 2217
B	SER 6	PHE 2217

There are175 helices in PDB entry 5GUG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	41	44	Right-handed 310
Helix 2	AA2	A	52	56	Right-handed 310
Helix 3	AA3	A	67	72	Right-handed alpha
Helix 4	AA4	A	85	110	Right-handed alpha
Helix 5	AA5	A	156	159	Right-handed 310
Helix 6	AA6	A	277	280	Right-handed 310
Helix 7	AA7	A	363	365	Right-handed 310
Helix 8	AA8	A	436	460	Right-handed alpha
Helix 9	AA9	A	466	485	Right-handed alpha
Helix 10	AB1	A	503	513	Right-handed alpha
Helix 11	AB2	A	514	524	Right-handed alpha
Helix 12	AB3	A	554	564	Right-handed alpha
Helix 13	AB4	A	567	575	Right-handed alpha
Helix 14	AB5	A	578	588	Right-handed alpha
Helix 15	AB6	A	591	601	Right-handed alpha
Helix 16	AB7	A	605	611	Right-handed alpha
Helix 17	AB8	A	612	625	Right-handed alpha
Helix 18	AB9	A	628	637	Right-handed alpha
Helix 19	AC1	A	640	642	Right-handed 310
Helix 20	AC2	A	643	658	Right-handed alpha
Helix 21	AC3	A	668	680	Right-handed alpha
Helix 22	AC4	A	684	703	Right-handed alpha
Helix 23	AC5	A	725	737	Right-handed alpha
Helix 24	AC6	A	750	760	Right-handed alpha
Helix 25	AC7	A	761	772	Right-handed alpha
Helix 26	AC8	A	775	790	Right-handed alpha
Helix 27	AC9	A	826	849	Right-handed alpha
Helix 28	AD1	A	854	878	Right-handed alpha
Helix 29	AD2	A	881	898	Right-handed alpha
Helix 30	AD3	A	962	986	Right-handed alpha
Helix 31	AD4	A	992	997	Right-handed alpha
Helix 32	AD5	A	1028	1033	Right-handed alpha
Helix 33	AD6	A	1036	1045	Right-handed alpha
Helix 34	AD7	A	1049	1054	Right-handed alpha
Helix 35	AD8	A	1060	1068	Right-handed alpha
Helix 36	AD9	A	1076	1086	Right-handed alpha
Helix 37	AE1	A	1087	1089	Right-handed 310
Helix 38	AE2	A	1094	1104	Right-handed alpha
Helix 39	AE3	A	1107	1116	Right-handed alpha
Helix 40	AE4	A	1118	1126	Right-handed alpha
Helix 41	AE5	A	1177	1192	Right-handed alpha
Helix 42	AE6	A	1194	1201	Right-handed alpha
Helix 43	AE7	A	1206	1211	Right-handed alpha
Helix 44	AE8	A	1211	1219	Right-handed alpha
Helix 45	AE9	A	1229	1234	Right-handed alpha
Helix 46	AF1	A	1234	1239	Right-handed alpha
Helix 47	AF2	A	1250	1257	Right-handed alpha
Helix 48	AF3	A	1271	1284	Right-handed alpha
Helix 49	AF4	A	1290	1298	Right-handed alpha
Helix 50	AF5	A	1303	1308	Right-handed alpha
Helix 51	AF6	A	1311	1318	Right-handed alpha
Helix 52	AF7	A	1322	1336	Right-handed alpha
Helix 53	AF8	A	1341	1347	Right-handed alpha
Helix 54	AF9	A	1349	1355	Right-handed alpha
Helix 55	AG1	A	1357	1365	Right-handed alpha
Helix 56	AG2	A	1384	1388	Right-handed 310
Helix 57	AG3	A	1400	1412	Right-handed alpha
Helix 58	AG4	A	1416	1421	Right-handed alpha
Helix 59	AG5	A	1422	1433	Right-handed alpha
Helix 60	AG6	A	1435	1442	Right-handed alpha
Helix 61	AG7	A	1446	1451	Right-handed alpha
Helix 62	AG8	A	1470	1490	Right-handed alpha
Helix 63	AG9	A	1594	1615	Right-handed alpha
Helix 64	AH1	A	1616	1630	Right-handed alpha
Helix 65	AH2	A	1630	1636	Right-handed alpha
Helix 66	AH3	A	1649	1661	Right-handed alpha
Helix 67	AH4	A	1666	1685	Right-handed alpha
Helix 68	AH5	A	1790	1800	Right-handed alpha
Helix 69	AH6	A	1803	1811	Right-handed alpha
Helix 70	AH7	A	1812	1815	Right-handed 310
Helix 71	AH8	A	1820	1833	Right-handed alpha
Helix 72	AH9	A	1835	1849	Right-handed alpha
Helix 73	AI1	A	1849	1855	Right-handed alpha
Helix 74	AI2	A	1857	1881	Right-handed alpha
Helix 75	AI3	A	1957	1983	Right-handed alpha
Helix 76	AI4	A	1985	1990	Right-handed alpha
Helix 77	AI5	A	1999	2011	Right-handed alpha
Helix 78	AI6	A	2020	2025	Right-handed alpha
Helix 79	AI7	A	2026	2044	Right-handed alpha
Helix 80	AI8	A	2047	2059	Right-handed alpha
Helix 81	AI9	A	2060	2070	Right-handed alpha
Helix 82	AJ1	A	2077	2100	Right-handed alpha
Helix 83	AJ2	A	2104	2112	Right-handed alpha
Helix 84	AJ3	A	2115	2122	Right-handed alpha
Helix 85	AJ4	A	2129	2135	Right-handed alpha
Helix 86	AJ5	A	2145	2150	Right-handed alpha
Helix 87	AJ6	A	2150	2162	Right-handed alpha
Helix 88	AJ7	A	2166	2177	Right-handed alpha
Helix 89	AJ8	A	2180	2186	Right-handed alpha
Helix 90	AJ9	A	2186	2191	Right-handed alpha
Helix 91	AK1	B	52	56	Right-handed 310
Helix 92	AK2	B	67	72	Right-handed alpha
Helix 93	AK3	B	86	110	Right-handed alpha
Helix 94	AK4	B	156	159	Right-handed 310
Helix 95	AK5	B	271	275	Right-handed 310
Helix 96	AK6	B	277	279	Right-handed 310
Helix 97	AK7	B	436	460	Right-handed alpha
Helix 98	AK8	B	466	485	Right-handed alpha
Helix 99	AK9	B	503	513	Right-handed alpha
Helix 100	AL1	B	515	524	Right-handed alpha
Helix 101	AL2	B	554	564	Right-handed alpha
Helix 102	AL3	B	567	575	Right-handed alpha
Helix 103	AL4	B	579	586	Right-handed alpha
Helix 104	AL5	B	591	602	Right-handed alpha
Helix 105	AL6	B	604	611	Right-handed alpha
Helix 106	AL7	B	612	625	Right-handed alpha
Helix 107	AL8	B	628	638	Right-handed alpha
Helix 108	AL9	B	643	658	Right-handed alpha
Helix 109	AM1	B	670	680	Right-handed alpha
Helix 110	AM2	B	684	697	Right-handed alpha
Helix 111	AM3	B	697	702	Right-handed alpha
Helix 112	AM4	B	708	714	Right-handed alpha
Helix 113	AM5	B	726	738	Right-handed alpha
Helix 114	AM6	B	750	770	Right-handed alpha
Helix 115	AM7	B	776	790	Right-handed alpha
Helix 116	AM8	B	827	849	Right-handed alpha
Helix 117	AM9	B	854	877	Right-handed alpha
Helix 118	AN1	B	882	899	Right-handed alpha
Helix 119	AN2	B	962	986	Right-handed alpha
Helix 120	AN3	B	992	996	Right-handed 310
Helix 121	AN4	B	1028	1045	Right-handed alpha
Helix 122	AN5	B	1050	1055	Right-handed alpha
Helix 123	AN6	B	1060	1068	Right-handed alpha
Helix 124	AN7	B	1073	1077	Right-handed 310
Helix 125	AN8	B	1078	1087	Right-handed alpha
Helix 126	AN9	B	1094	1104	Right-handed alpha
Helix 127	AO1	B	1107	1116	Right-handed alpha
Helix 128	AO2	B	1118	1131	Right-handed alpha
Helix 129	AO3	B	1177	1192	Right-handed alpha
Helix 130	AO4	B	1194	1201	Right-handed alpha
Helix 131	AO5	B	1202	1204	Right-handed 310
Helix 132	AO6	B	1205	1219	Right-handed alpha
Helix 133	AO7	B	1229	1238	Right-handed alpha
Helix 134	AO8	B	1250	1256	Right-handed alpha
Helix 135	AO9	B	1272	1285	Right-handed alpha
Helix 136	AP1	B	1290	1295	Right-handed alpha
Helix 137	AP2	B	1301	1310	Right-handed 310
Helix 138	AP3	B	1311	1320	Right-handed alpha
Helix 139	AP4	B	1322	1336	Right-handed alpha
Helix 140	AP5	B	1349	1355	Right-handed alpha
Helix 141	AP6	B	1356	1363	Right-handed alpha
Helix 142	AP7	B	1364	1366	Right-handed 310
Helix 143	AP8	B	1371	1388	Right-handed alpha
Helix 144	AP9	B	1403	1411	Right-handed alpha
Helix 145	AQ1	B	1421	1431	Right-handed alpha
Helix 146	AQ2	B	1435	1440	Right-handed 310
Helix 147	AQ3	B	1447	1457	Right-handed alpha
Helix 148	AQ4	B	1458	1462	Right-handed 310
Helix 149	AQ5	B	1472	1492	Right-handed alpha
Helix 150	AQ6	B	1596	1615	Right-handed alpha
Helix 151	AQ7	B	1616	1628	Right-handed alpha
Helix 152	AQ8	B	1629	1636	Right-handed alpha
Helix 153	AQ9	B	1640	1644	Right-handed 310
Helix 154	AR1	B	1649	1661	Right-handed alpha
Helix 155	AR2	B	1668	1679	Right-handed alpha
Helix 156	AR3	B	1790	1801	Right-handed alpha
Helix 157	AR4	B	1803	1814	Right-handed alpha
Helix 158	AR5	B	1817	1819	Right-handed 310
Helix 159	AR6	B	1820	1833	Right-handed alpha
Helix 160	AR7	B	1835	1850	Right-handed alpha
Helix 161	AR8	B	1850	1876	Right-handed alpha
Helix 162	AR9	B	1876	1881	Right-handed alpha
Helix 163	AS1	B	1957	1983	Right-handed alpha
Helix 164	AS2	B	1985	1990	Right-handed alpha
Helix 165	AS3	B	2000	2010	Right-handed alpha
Helix 166	AS4	B	2025	2043	Right-handed alpha
Helix 167	AS5	B	2047	2059	Right-handed alpha
Helix 168	AS6	B	2060	2071	Right-handed alpha
Helix 169	AS7	B	2077	2099	Right-handed alpha
Helix 170	AS8	B	2103	2113	Right-handed alpha
Helix 171	AS9	B	2118	2135	Right-handed alpha
Helix 172	AT1	B	2145	2160	Right-handed alpha
Helix 173	AT2	B	2161	2163	Right-handed 310
Helix 174	AT3	B	2165	2177	Right-handed alpha
Helix 175	AT4	B	2182	2193	Right-handed alpha

There are 14 sheets in PDB entry 5GUG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	207	208	first strand
Strand 2	A	37	39	anti-parallel
Strand 3	A	24	29	anti-parallel
Strand 4	A	14	20	anti-parallel
Strand 5	A	218	224	anti-parallel
Strand 6	A	179	186	anti-parallel
Strand 7	A	161	165	anti-parallel
Strand 8	A	120	125	anti-parallel
Strand 9	A	58	61	anti-parallel
Strand 10	A	14	20	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	131	135	first strand
Strand 2	A	147	152	anti-parallel
Strand 3	A	210	211	anti-parallel
Strand 4	A	193	194	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	386	388	first strand
Strand 2	A	430	434	anti-parallel
Strand 3	A	239	244	anti-parallel
Strand 4	A	282	286	anti-parallel
Strand 5	A	303	307	anti-parallel
Strand 6	A	367	369	anti-parallel
Strand 7	A	391	392	anti-parallel
Strand 8	A	397	398	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	251	256	first strand
Strand 2	A	259	264	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	313	316	first strand
Strand 2	A	355	358	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	400	401	first strand
Strand 2	A	418	419	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2197	2198	first strand
Strand 2	A	2211	2212	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	147	152	first strand
Strand 2	B	130	139	anti-parallel
Strand 3	B	120	125	anti-parallel
Strand 4	B	58	61	anti-parallel
Strand 5	B	14	20	anti-parallel
Strand 6	B	24	29	anti-parallel
Strand 7	B	37	39	anti-parallel
Strand 8	B	207	208	anti-parallel

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There are 10 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	147	152	first strand
Strand 2	B	130	139	anti-parallel
Strand 3	B	120	125	anti-parallel
Strand 4	B	161	165	anti-parallel
Strand 5	B	179	186	anti-parallel
Strand 6	B	218	224	anti-parallel
Strand 7	B	14	20	anti-parallel
Strand 8	B	24	29	anti-parallel
Strand 9	B	37	39	anti-parallel
Strand 10	B	207	208	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	193	194	first strand
Strand 2	B	210	211	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	303	304	first strand
Strand 2	B	367	371	anti-parallel
Strand 3	B	387	392	anti-parallel
Strand 4	B	430	434	anti-parallel
Strand 5	B	239	244	anti-parallel
Strand 6	B	281	283	anti-parallel
Strand 7	B	306	307	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	303	304	first strand
Strand 2	B	367	371	anti-parallel
Strand 3	B	387	392	anti-parallel
Strand 4	B	397	401	anti-parallel
Strand 5	B	418	421	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	251	256	first strand
Strand 2	B	259	265	anti-parallel
Strand 3	B	415	416	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	313	316	first strand
Strand 2	B	355	358	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5GUG

Analysis of interatomic Contacts of Structural Units in PDB entry:
5GUG