Analysis of interatomic Contacts of Structural Units in PDB entry:
5GV2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5GV2 entry

There are 2 chains in PDB entry 5GV2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 SER -8ARG 401
A
 GLY -7GLN 324
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 5GV2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
17 22Right-handed 310
Helix 2
AA2
C
23 33Right-handed alpha
Helix 3
AA3
C
34 37Right-handed 310
Helix 4
AA4
C
57 61Right-handed alpha
Helix 5
AA5
C
83 87Right-handed 310
Helix 6
AA6
C
94 98Right-handed 310
Helix 7
AA7
C
101 108Right-handed alpha
Helix 8
AA8
C
129 138Right-handed alpha
Helix 9
AA9
C
190 192Right-handed 310
Helix 10
AB1
C
193 207Right-handed alpha
Helix 11
AB2
C
243 247Right-handed alpha
Helix 12
AB3
C
279 291Right-handed alpha
Helix 13
AB4
C
312 322Right-handed alpha
Helix 14
AB5
A
17 22Right-handed 310
Helix 15
AB6
A
23 33Right-handed alpha
Helix 16
AB7
A
34 37Right-handed 310
Helix 17
AB8
A
57 61Right-handed alpha
Helix 18
AB9
A
94 98Right-handed 310
Helix 19
AC1
A
101 108Right-handed alpha
Helix 20
AC2
A
129 138Right-handed alpha
Helix 21
AC3
A
190 192Right-handed 310
Helix 22
AC4
A
193 207Right-handed alpha
Helix 23
AC5
A
243 247Right-handed alpha
Helix 24
AC6
A
279 291Right-handed alpha
Helix 25
AC7
A
312 322Right-handed alpha
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There are 4 sheets in PDB entry 5GV2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
69 71first strand
Strand 2
C
2 15anti-parallel
Strand 3
C
76 82anti-parallel
Strand 4
C
121 126anti-parallel
Strand 5
C
112 116anti-parallel
Strand 6
C
296 299anti-parallel
Strand 7
C
304 309anti-parallel
Strand 8
C
263 268anti-parallel
Strand 9
C
177 178anti-parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
150 153first strand
Strand 2
C
142 147anti-parallel
Strand 3
C
2 15parallel
Strand 4
C
51 56anti-parallel
Strand 5
C
41 46anti-parallel
Strand 6
C
228 233anti-parallel
Strand 7
C
236 242anti-parallel
Strand 8
C
183 187anti-parallel
Strand 9
C
263 268anti-parallel
Strand 10
C
177 178anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 71first strand
Strand 2
A
1 15anti-parallel
Strand 3
A
76 82anti-parallel
Strand 4
A
121 126anti-parallel
Strand 5
A
112 116anti-parallel
Strand 6
A
296 299anti-parallel
Strand 7
A
304 309anti-parallel
Strand 8
A
263 268anti-parallel
Strand 9
A
177 178anti-parallel
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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 153first strand
Strand 2
A
141 147anti-parallel
Strand 3
A
1 15parallel
Strand 4
A
51 56anti-parallel
Strand 5
A
41 46anti-parallel
Strand 6
A
228 233anti-parallel
Strand 7
A
236 242anti-parallel
Strand 8
A
183 187anti-parallel
Strand 9
A
263 268anti-parallel
Strand 10
A
177 178anti-parallel
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