Analysis of interatomic Contacts of Structural Units in PDB entry:
5H1L


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5H1L entry

There are 2 chains in PDB entry 5H1L (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 4GLN 722
B
 A 1 G 7
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 8 helices in PDB entry 5H1L. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
43 46Right-handed 310
Helix 2
AA2
A
140 142Right-handed 310
Helix 3
AA3
A
304 306Right-handed 310
Helix 4
AA4
A
314 319Right-handed 310
Helix 5
AA5
A
522 531Right-handed alpha
Helix 6
AA6
A
593 597Right-handed 310
Helix 7
AA7
A
614 621Right-handed alpha
Helix 8
AA8
A
713 715Right-handed 310
Back to top of page

There are 14 sheets in PDB entry 5H1L. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 8first strand
Strand 2
A
707 711anti-parallel
Strand 3
A
697 702anti-parallel
Strand 4
A
685 690anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 23first strand
Strand 2
A
27 32anti-parallel
Strand 3
A
35 41anti-parallel
Strand 4
A
54 60anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 72first strand
Strand 2
A
81 86anti-parallel
Strand 3
A
91 95anti-parallel
Strand 4
A
100 105anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 117first strand
Strand 2
A
124 129anti-parallel
Strand 3
A
133 138anti-parallel
Strand 4
A
143 148anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
154 159first strand
Strand 2
A
166 171anti-parallel
Strand 3
A
176 180anti-parallel
Strand 4
A
187 191anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 203first strand
Strand 2
A
241 246anti-parallel
Strand 3
A
250 255anti-parallel
Strand 4
A
260 266anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
289 290first strand
Strand 2
A
298 302anti-parallel
Strand 3
A
308 312anti-parallel
Strand 4
A
321 323anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
337 344first strand
Strand 2
A
350 356anti-parallel
Strand 3
A
360 365anti-parallel
Strand 4
A
371 376anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
382 387first strand
Strand 2
A
394 399anti-parallel
Strand 3
A
404 408anti-parallel
Strand 4
A
417 421anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
429 434first strand
Strand 2
A
441 446anti-parallel
Strand 3
A
451 455anti-parallel
Strand 4
A
463 464anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
473 479first strand
Strand 2
A
497 502anti-parallel
Strand 3
A
507 510anti-parallel
Strand 4
A
520 521anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
539 544first strand
Strand 2
A
550 555anti-parallel
Strand 3
A
560 564anti-parallel
Strand 4
A
569 574anti-parallel
Strand 5
A
626 628parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
581 586first strand
Strand 2
A
599 604anti-parallel
Strand 3
A
609 613anti-parallel
Strand 4
A
633 635anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
642 647first strand
Strand 2
A
654 659anti-parallel
Strand 3
A
664 668anti-parallel
Strand 4
A
673 678anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il