Analysis of interatomic Contacts of Structural Units in PDB entry:
5H4Z


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5H4Z entry

There are 2 chains in PDB entry 5H4Z (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 105PRO 233
B
 LYS 106PRO 233
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 3 helices in PDB entry 5H4Z. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
215 217Right-handed 310
Helix 2
AA2
B
183 187Right-handed 310
Helix 3
AA3
B
215 217Right-handed 310
Back to top of page

There are 4 sheets in PDB entry 5H4Z. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 180first strand
Strand 2
A
124 133anti-parallel
Strand 3
A
111 119anti-parallel
Strand 4
A
223 228anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
155 161first strand
Strand 2
A
146 153anti-parallel
Strand 3
A
190 197anti-parallel
Strand 4
A
205 213anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
172 180first strand
Strand 2
B
124 133anti-parallel
Strand 3
B
111 119anti-parallel
Strand 4
B
223 228anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
155 161first strand
Strand 2
B
146 153anti-parallel
Strand 3
B
190 197anti-parallel
Strand 4
B
205 213anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il