Analysis of interatomic Contacts of Structural Units in PDB entry:
5H5Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5H5Q entry

There are 3 chains in PDB entry 5H5Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 33GLN 72
A
 GLY 74PHE 197
B
 CYS 901ARG 913
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 5H5Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
34 38Right-handed 310
Helix 2
AA2
A
40 43Right-handed 310
Helix 3
AA3
A
57 60Right-handed 310
Helix 4
AA4
A
75 91Right-handed alpha
Helix 5
AA5
A
92 94Right-handed 310
Helix 6
AA6
A
112 123Right-handed alpha
Helix 7
AA7
A
141 149Right-handed alpha
Helix 8
AA8
A
185 191Right-handed 310
Helix 9
AA9
A
192 197Right-handed alpha
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There are 3 sheets in PDB entry 5H5Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 47first strand
Strand 2
A
53 55anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 129first strand
Strand 2
A
96 101parallel
Strand 3
A
64 69parallel
Strand 4
A
167 170anti-parallel
Strand 5
A
176 180anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
902 903first strand
Strand 2
B
909 910anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il