Analysis of interatomic Contacts of Structural Units in PDB entry:
5H8O


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5H8O entry

There are 2 chains in PDB entry 5H8O (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 3SER 113
B
 ILE 115SER 195
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 5H8O. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
118 125Right-handed alpha
Helix 2
AA2
B
129 137Right-handed alpha
Helix 3
AA3
B
154 161Right-handed alpha
Helix 4
AA4
B
162 164Right-handed 310
Helix 5
AA5
B
165 169Right-handed 310
Helix 6
AA6
B
170 183Right-handed alpha
Helix 7
AA7
B
185 194Right-handed alpha
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There are 3 sheets in PDB entry 5H8O. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 9first strand
Strand 2
A
20 27anti-parallel
Strand 3
A
80 85anti-parallel
Strand 4
A
71 75anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 14first strand
Strand 2
A
108 112parallel
Strand 3
A
95 100anti-parallel
Strand 4
A
36 41anti-parallel
Strand 5
A
48 53anti-parallel
Strand 6
A
60 62anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 14first strand
Strand 2
A
108 112parallel
Strand 3
A
95 100anti-parallel
Strand 4
A
103 104anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il