Analysis of interatomic Contacts of Structural Units in PDB entry:
5H9F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5H9F entry

There are 5 chains in PDB entry 5H9F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ASN 2PRO 495
B
ASP 3ASN 159
C
ASP 3THR 156
D
SER 2GLY 361
E
SER 2MET 182
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are146 helices in PDB entry 5H9F. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
23 29Right-handed alpha
Helix 2
AA2
A
40 59Right-handed alpha
Helix 3
AA3
A
63 73Right-handed alpha
Helix 4
AA4
A
76 85Right-handed alpha
Helix 5
AA5
A
86 91Right-handed 310
Helix 6
AA6
A
113 118Right-handed 310
Helix 7
AA7
A
126 131Right-handed alpha
Helix 8
AA8
A
140 154Right-handed alpha
Helix 9
AA9
A
180 188Right-handed alpha
Helix 10
AB1
A
191 199Right-handed alpha
Helix 11
AB2
A
224 226Right-handed 310
Helix 12
AB3
A
227 233Right-handed alpha
Helix 13
AB4
A
310 322Right-handed alpha
Helix 14
AB5
A
328 338Right-handed alpha
Helix 15
AB6
A
376 406Right-handed alpha
Helix 16
AB7
A
410 413Right-handed 310
Helix 17
AB8
A
414 429Right-handed alpha
Helix 18
AB9
A
430 438Right-handed alpha
Helix 19
AC1
A
442 467Right-handed alpha
Helix 20
AC2
A
468 470Right-handed 310
Helix 21
AC3
A
472 474Right-handed 310
Helix 22
AC4
A
475 492Right-handed alpha
Helix 23
AC5
B
6 17Right-handed alpha
Helix 24
AC6
B
18 27Right-handed alpha
Helix 25
AC7
B
30 36Right-handed 310
Helix 26
AC8
B
37 45Right-handed alpha
Helix 27
AC9
B
46 48Right-handed 310
Helix 28
AD1
B
51 66Right-handed alpha
Helix 29
AD2
B
86 95Right-handed alpha
Helix 30
AD3
B
98 107Right-handed alpha
Helix 31
AD4
B
111 125Right-handed alpha
Helix 32
AD5
B
129 139Right-handed alpha
Helix 33
AD6
B
141 159Right-handed alpha
Helix 34
AD7
C
6 16Right-handed alpha
Helix 35
AD8
C
18 27Right-handed alpha
Helix 36
AD9
C
30 36Right-handed 310
Helix 37
AE1
C
37 45Right-handed alpha
Helix 38
AE2
C
46 48Right-handed 310
Helix 39
AE3
C
51 53Right-handed 310
Helix 40
AE4
C
54 66Right-handed alpha
Helix 41
AE5
C
86 94Right-handed alpha
Helix 42
AE6
C
98 108Right-handed alpha
Helix 43
AE7
C
111 125Right-handed alpha
Helix 44
AE8
C
129 140Right-handed alpha
Helix 45
AE9
C
141 156Right-handed alpha
Helix 46
AF1
D
40 50Right-handed alpha
Helix 47
AF2
D
51 58Right-handed alpha
Helix 48
AF3
D
68 77Right-handed alpha
Helix 49
AF4
D
84 97Right-handed alpha
Helix 50
AF5
D
115 133Right-handed alpha
Helix 51
AF6
D
135 145Right-handed alpha
Helix 52
AF7
D
147 152Right-handed alpha
Helix 53
AF8
D
153 156Right-handed 310
Helix 54
AF9
D
157 164Right-handed alpha
Helix 55
AG1
D
171 176Right-handed alpha
Helix 56
AG2
D
232 239Right-handed alpha
Helix 57
AG3
D
243 261Right-handed alpha
Helix 58
AG4
D
290 295Right-handed 310
Helix 59
AG5
D
304 323Right-handed alpha
Helix 60
AG6
D
349 359Right-handed alpha
Helix 61
AG7
E
40 50Right-handed alpha
Helix 62
AG8
E
51 58Right-handed alpha
Helix 63
AG9
E
68 79Right-handed alpha
Helix 64
AH1
E
84 97Right-handed alpha
Helix 65
AH2
E
115 132Right-handed alpha
Helix 66
AH3
E
135 144Right-handed alpha
Helix 67
AH4
E
147 152Right-handed alpha
Helix 68
AH5
E
153 156Right-handed 310
Helix 69
AH6
E
157 164Right-handed alpha
Helix 70
AH7
E
171 176Right-handed alpha
Helix 71
AH8
E
232 239Right-handed alpha
Helix 72
AH9
E
243 259Right-handed alpha
Helix 73
AI1
E
266 271Right-handed alpha
Helix 74
AI2
E
290 295Right-handed 310
Helix 75
AI3
E
304 323Right-handed alpha
Helix 76
AI4
E
349 359Right-handed alpha
Helix 77
AI5
F
40 50Right-handed alpha
Helix 78
AI6
F
51 58Right-handed alpha
Helix 79
AI7
F
68 79Right-handed alpha
Helix 80
AI8
F
84 97Right-handed alpha
Helix 81
AI9
F
115 132Right-handed alpha
Helix 82
AJ1
F
135 144Right-handed alpha
Helix 83
AJ2
F
147 152Right-handed alpha
Helix 84
AJ3
F
153 156Right-handed 310
Helix 85
AJ4
F
157 164Right-handed alpha
Helix 86
AJ5
F
171 176Right-handed alpha
Helix 87
AJ6
F
232 239Right-handed alpha
Helix 88
AJ7
F
243 261Right-handed alpha
Helix 89
AJ8
F
266 271Right-handed alpha
Helix 90
AJ9
F
290 295Right-handed 310
Helix 91
AK1
F
304 323Right-handed alpha
Helix 92
AK2
F
349 359Right-handed alpha
Helix 93
AK3
G
40 50Right-handed alpha
Helix 94
AK4
G
51 58Right-handed alpha
Helix 95
AK5
G
68 79Right-handed alpha
Helix 96
AK6
G
84 97Right-handed alpha
Helix 97
AK7
G
115 132Right-handed alpha
Helix 98
AK8
G
135 144Right-handed alpha
Helix 99
AK9
G
146 152Right-handed alpha
Helix 100
AL1
G
153 156Right-handed 310
Helix 101
AL2
G
157 164Right-handed alpha
Helix 102
AL3
G
171 176Right-handed alpha
Helix 103
AL4
G
232 239Right-handed alpha
Helix 104
AL5
G
243 261Right-handed alpha
Helix 105
AL6
G
266 271Right-handed alpha
Helix 106
AL7
G
290 295Right-handed 310
Helix 107
AL8
G
304 323Right-handed alpha
Helix 108
AL9
G
349 359Right-handed alpha
Helix 109
AM1
H
40 50Right-handed alpha
Helix 110
AM2
H
51 58Right-handed alpha
Helix 111
AM3
H
68 79Right-handed alpha
Helix 112
AM4
H
84 97Right-handed alpha
Helix 113
AM5
H
115 132Right-handed alpha
Helix 114
AM6
H
135 144Right-handed alpha
Helix 115
AM7
H
147 152Right-handed alpha
Helix 116
AM8
H
153 156Right-handed 310
Helix 117
AM9
H
157 164Right-handed alpha
Helix 118
AN1
H
171 176Right-handed alpha
Helix 119
AN2
H
232 239Right-handed alpha
Helix 120
AN3
H
243 261Right-handed alpha
Helix 121
AN4
H
266 271Right-handed alpha
Helix 122
AN5
H
290 294Right-handed 310
Helix 123
AN6
H
304 324Right-handed alpha
Helix 124
AN7
H
349 359Right-handed alpha
Helix 125
AN8
I
40 50Right-handed alpha
Helix 126
AN9
I
51 58Right-handed alpha
Helix 127
AO1
I
71 79Right-handed alpha
Helix 128
AO2
I
80 82Right-handed 310
Helix 129
AO3
I
84 97Right-handed alpha
Helix 130
AO4
I
112 132Right-handed alpha
Helix 131
AO5
I
135 143Right-handed alpha
Helix 132
AO6
I
143 154Right-handed alpha
Helix 133
AO7
I
156 164Right-handed alpha
Helix 134
AO8
I
232 238Right-handed alpha
Helix 135
AO9
I
243 261Right-handed alpha
Helix 136
AP1
I
266 271Right-handed alpha
Helix 137
AP2
I
290 294Right-handed 310
Helix 138
AP3
I
304 320Right-handed alpha
Helix 139
AP4
I
349 359Right-handed alpha
Helix 140
AP5
J
32 44Right-handed alpha
Helix 141
AP6
J
50 60Right-handed alpha
Helix 142
AP7
J
129 139Right-handed alpha
Helix 143
AP8
J
166 172Right-handed alpha
Helix 144
AP9
K
17 25Right-handed alpha
Helix 145
AQ1
K
118 131Right-handed alpha
Helix 146
AQ2
K
171 182Right-handed alpha
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There are 31 sheets in PDB entry 5H9F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
20 22first strand
Strand 2
A
9 13anti-parallel
Strand 3
A
34 36anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
173 176first strand
Strand 2
A
345 353anti-parallel
Strand 3
A
356 363anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
220 222first strand
Strand 2
A
272 274parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
238 241first strand
Strand 2
A
264 267anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
248 249first strand
Strand 2
A
256 257anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
292 297first strand
Strand 2
A
284 289anti-parallel
Strand 3
A
325 326anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
73 74first strand
Strand 2
B
127 128parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
73 74first strand
Strand 2
C
127 128parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
12 13first strand
Strand 2
D
222 231anti-parallel
Strand 3
D
182 184anti-parallel
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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
28 31first strand
Strand 2
D
34 39anti-parallel
Strand 3
D
187 189anti-parallel
Strand 4
D
222 231anti-parallel
Strand 5
D
4 9anti-parallel
Strand 6
D
278 284anti-parallel
Strand 7
D
329 333anti-parallel
Strand 8
D
345 347parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
63 67first strand
Strand 2
D
107 114anti-parallel
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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
28 31first strand
Strand 2
E
34 39anti-parallel
Strand 3
E
187 189anti-parallel
Strand 4
E
213 231anti-parallel
Strand 5
E
196 202anti-parallel
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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
182 184first strand
Strand 2
E
213 231anti-parallel
Strand 3
E
4 16anti-parallel
Strand 4
E
278 284anti-parallel
Strand 5
E
329 333anti-parallel
Strand 6
E
344 346parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
63 67first strand
Strand 2
E
107 114anti-parallel
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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
28 31first strand
Strand 2
F
34 39anti-parallel
Strand 3
F
187 189anti-parallel
Strand 4
F
213 231anti-parallel
Strand 5
F
196 202anti-parallel
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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
182 184first strand
Strand 2
F
213 231anti-parallel
Strand 3
F
4 16anti-parallel
Strand 4
F
278 284anti-parallel
Strand 5
F
329 333anti-parallel
Strand 6
F
345 347parallel
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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
63 67first strand
Strand 2
F
107 114anti-parallel
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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
28 31first strand
Strand 2
G
34 39anti-parallel
Strand 3
G
187 189anti-parallel
Strand 4
G
213 231anti-parallel
Strand 5
G
196 202anti-parallel
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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
182 184first strand
Strand 2
G
213 231anti-parallel
Strand 3
G
4 16anti-parallel
Strand 4
G
278 284anti-parallel
Strand 5
G
329 333anti-parallel
Strand 6
G
345 347parallel
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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
63 67first strand
Strand 2
G
107 114anti-parallel
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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
28 31first strand
Strand 2
H
34 39anti-parallel
Strand 3
H
187 189anti-parallel
Strand 4
H
213 231anti-parallel
Strand 5
H
196 202anti-parallel
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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
182 184first strand
Strand 2
H
213 231anti-parallel
Strand 3
H
4 16anti-parallel
Strand 4
H
278 284anti-parallel
Strand 5
H
329 333anti-parallel
Strand 6
H
345 347parallel
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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
63 67first strand
Strand 2
H
107 114anti-parallel
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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
28 31first strand
Strand 2
I
34 39anti-parallel
Strand 3
I
187 189anti-parallel
Strand 4
I
213 231anti-parallel
Strand 5
I
196 202anti-parallel
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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
182 184first strand
Strand 2
I
213 231anti-parallel
Strand 3
I
4 16anti-parallel
Strand 4
I
278 284anti-parallel
Strand 5
I
329 333anti-parallel
Strand 6
I
345 347parallel
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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
24 25first strand
Strand 2
J
103 122parallel
Strand 3
J
2 14anti-parallel
Strand 4
J
158 164anti-parallel
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There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
80 89first strand
Strand 2
J
103 122anti-parallel
Strand 3
J
61 68anti-parallel
Strand 4
J
181 183anti-parallel
Strand 5
J
207 216anti-parallel
Strand 6
J
193 201anti-parallel
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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
70 72first strand
Strand 2
J
75 77anti-parallel
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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
37 41first strand
Strand 2
K
51 56anti-parallel
Strand 3
K
2 7anti-parallel
Strand 4
K
67 70anti-parallel
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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
134 142first strand
Strand 2
K
161 169anti-parallel
Strand 3
K
83 90anti-parallel
Strand 4
K
194 197anti-parallel
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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
93 94first strand
Strand 2
K
114 115anti-parallel
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