Analysis of interatomic Contacts of Structural Units in PDB entry:
5HGC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5HGC entry

There is 1 chain in PDB entry 5HGC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 21ILE 398
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 5HGC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
25 30Right-handed alpha
Helix 2
AA2
A
31 50Right-handed alpha
Helix 3
AA3
A
58 71Right-handed alpha
Helix 4
AA4
A
74 85Right-handed alpha
Helix 5
AA5
A
93 110Right-handed alpha
Helix 6
AA6
A
132 144Right-handed alpha
Helix 7
AA7
A
154 170Right-handed alpha
Helix 8
AA8
A
204 208Right-handed 310
Helix 9
AA9
A
264 272Right-handed alpha
Helix 10
AB1
A
273 284Right-handed alpha
Helix 11
AB2
A
304 311Right-handed alpha
Helix 12
AB3
A
314 318Right-handed 310
Helix 13
AB4
A
323 328Right-handed alpha
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There are 3 sheets in PDB entry 5HGC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 57first strand
Strand 2
A
386 393anti-parallel
Strand 3
A
375 381anti-parallel
Strand 4
A
253 260anti-parallel
Strand 5
A
242 248anti-parallel
Strand 6
A
220 237anti-parallel
Strand 7
A
209 214anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 57first strand
Strand 2
A
386 393anti-parallel
Strand 3
A
375 381anti-parallel
Strand 4
A
253 260anti-parallel
Strand 5
A
242 248anti-parallel
Strand 6
A
220 237anti-parallel
Strand 7
A
285 294anti-parallel
Strand 8
A
368 370parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
146 150first strand
Strand 2
A
120 126parallel
Strand 3
A
187 196anti-parallel
Strand 4
A
336 345parallel
Strand 5
A
296 303anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il