Analysis of interatomic Contacts of Structural Units in PDB entry:
5HHM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5HHM entry

There are 10 chains in PDB entry 5HHM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1ALA 245
B
 MET 0ARG 97
C
 GLY 1LEU 9
D
 GLN 3SER 201
E
 GLY 4ALA 243
F
 GLY 1ALA 245
G
 MET 0ARG 97
H
 GLY 1LEU 9
I
 GLN 3SER 201
J
 GLY 4ALA 243
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 5HHM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
50 55Right-handed 310
Helix 2
AA2
A
56 85Right-handed alpha
Helix 3
AA3
A
140 150Right-handed alpha
Helix 4
AA4
A
151 162Right-handed alpha
Helix 5
AA5
A
162 175Right-handed alpha
Helix 6
AA6
A
175 180Right-handed alpha
Helix 7
AA7
D
81 85Right-handed 310
Helix 8
AA8
E
116 120Right-handed 310
Helix 9
AA9
E
131 139Right-handed alpha
Helix 10
AB1
E
198 203Right-handed alpha
Helix 11
AB2
F
49 55Right-handed 310
Helix 12
AB3
F
56 86Right-handed alpha
Helix 13
AB4
F
137 150Right-handed alpha
Helix 14
AB5
F
151 162Right-handed alpha
Helix 15
AB6
F
162 175Right-handed alpha
Helix 16
AB7
F
175 180Right-handed alpha
Helix 17
AB8
I
81 85Right-handed 310
Helix 18
AB9
I
183 187Right-handed 310
Helix 19
AC1
J
116 120Right-handed 310
Helix 20
AC2
J
132 139Right-handed alpha
Helix 21
AC3
J
198 203Right-handed alpha
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There are 32 sheets in PDB entry 5HHM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 47first strand
Strand 2
A
31 37anti-parallel
Strand 3
A
21 28anti-parallel
Strand 4
A
3 12anti-parallel
Strand 5
A
94 103anti-parallel
Strand 6
A
109 118anti-parallel
Strand 7
A
121 126anti-parallel
Strand 8
A
133 135anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
234 235first strand
Strand 2
A
241 242anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 11first strand
Strand 2
B
21 30anti-parallel
Strand 3
B
62 70anti-parallel
Strand 4
B
50 51anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 11first strand
Strand 2
B
21 30anti-parallel
Strand 3
B
62 70anti-parallel
Strand 4
B
55 56anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 45first strand
Strand 2
B
36 41anti-parallel
Strand 3
B
78 83anti-parallel
Strand 4
B
91 94anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
6 8first strand
Strand 2
D
20 25anti-parallel
Strand 3
D
72 77anti-parallel
Strand 4
D
62 66anti-parallel
Strand 5
D
56 59anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
11 15first strand
Strand 2
D
105 110parallel
Strand 3
D
86 93anti-parallel
Strand 4
D
33 38anti-parallel
Strand 5
D
45 50anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
11 15first strand
Strand 2
D
105 110parallel
Strand 3
D
86 93anti-parallel
Strand 4
D
99 101anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
119 123first strand
Strand 2
D
133 137anti-parallel
Strand 3
D
168 177anti-parallel
Strand 4
D
153 155anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
119 123first strand
Strand 2
D
133 137anti-parallel
Strand 3
D
168 177anti-parallel
Strand 4
D
159 163anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
6 7first strand
Strand 2
E
26 27anti-parallel
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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
12 16first strand
Strand 2
E
109 114parallel
Strand 3
E
89 96anti-parallel
Strand 4
E
33 39anti-parallel
Strand 5
E
46 53anti-parallel
Strand 6
E
56 59anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
12 16first strand
Strand 2
E
109 114parallel
Strand 3
E
89 96anti-parallel
Strand 4
E
104 105anti-parallel
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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
21 23first strand
Strand 2
E
78 80anti-parallel
Strand 3
E
66 68anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
127 128first strand
Strand 2
E
140 150anti-parallel
Strand 3
E
188 197anti-parallel
Strand 4
E
170 172anti-parallel
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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
127 128first strand
Strand 2
E
140 150anti-parallel
Strand 3
E
188 197anti-parallel
Strand 4
E
177 178anti-parallel
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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
164 166first strand
Strand 2
E
155 161anti-parallel
Strand 3
E
207 214anti-parallel
Strand 4
E
233 240anti-parallel
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There are 8 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
46 47first strand
Strand 2
F
31 37anti-parallel
Strand 3
F
21 28anti-parallel
Strand 4
F
3 12anti-parallel
Strand 5
F
94 103anti-parallel
Strand 6
F
109 118anti-parallel
Strand 7
F
121 126anti-parallel
Strand 8
F
133 135anti-parallel
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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
234 235first strand
Strand 2
F
241 242anti-parallel
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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
6 11first strand
Strand 2
G
21 30anti-parallel
Strand 3
G
62 70anti-parallel
Strand 4
G
50 51anti-parallel
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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
6 11first strand
Strand 2
G
21 30anti-parallel
Strand 3
G
62 70anti-parallel
Strand 4
G
55 56anti-parallel
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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
44 45first strand
Strand 2
G
36 41anti-parallel
Strand 3
G
78 83anti-parallel
Strand 4
G
91 94anti-parallel
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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
6 8first strand
Strand 2
I
20 25anti-parallel
Strand 3
I
72 77anti-parallel
Strand 4
I
62 66anti-parallel
Strand 5
I
56 59anti-parallel
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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
11 15first strand
Strand 2
I
105 110parallel
Strand 3
I
86 93anti-parallel
Strand 4
I
33 38anti-parallel
Strand 5
I
45 50anti-parallel
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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
11 15first strand
Strand 2
I
105 110parallel
Strand 3
I
86 93anti-parallel
Strand 4
I
99 101anti-parallel
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There are 8 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
153 155first strand
Strand 2
I
168 177anti-parallel
Strand 3
I
133 137anti-parallel
Strand 4
I
119 125anti-parallel
Strand 5
J
124 129anti-parallel
Strand 6
J
140 150anti-parallel
Strand 7
J
188 197anti-parallel
Strand 8
J
170 172anti-parallel
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There are 8 strands in AC9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
159 163first strand
Strand 2
I
168 177anti-parallel
Strand 3
I
133 137anti-parallel
Strand 4
I
119 125anti-parallel
Strand 5
J
124 129anti-parallel
Strand 6
J
140 150anti-parallel
Strand 7
J
188 197anti-parallel
Strand 8
J
177 178anti-parallel
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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
6 7first strand
Strand 2
J
26 27anti-parallel
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There are 6 strands in AD2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
12 16first strand
Strand 2
J
109 114parallel
Strand 3
J
89 96anti-parallel
Strand 4
J
33 39anti-parallel
Strand 5
J
45 53anti-parallel
Strand 6
J
56 59anti-parallel
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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
12 16first strand
Strand 2
J
109 114parallel
Strand 3
J
89 96anti-parallel
Strand 4
J
104 105anti-parallel
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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
21 23first strand
Strand 2
J
78 80anti-parallel
Strand 3
J
66 68anti-parallel
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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
164 166first strand
Strand 2
J
155 161anti-parallel
Strand 3
J
207 214anti-parallel
Strand 4
J
233 240anti-parallel
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