Analysis of interatomic Contacts of Structural Units in PDB entry:
5HNR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5HNR entry

There are 2 chains in PDB entry 5HNR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
MET 1LYS 328
B
MET 1LYS 328
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 5HNR. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
7 11Right-handed 310
Helix 2
AA2
A
13 21Right-handed alpha
Helix 3
AA3
A
27 29Right-handed 310
Helix 4
AA4
A
60 71Right-handed alpha
Helix 5
AA5
A
99 112Right-handed alpha
Helix 6
AA6
A
142 160Right-handed alpha
Helix 7
AA7
A
173 185Right-handed alpha
Helix 8
AA8
A
202 204Right-handed 310
Helix 9
AA9
A
205 213Right-handed alpha
Helix 10
AB1
A
230 245Right-handed alpha
Helix 11
AB2
A
254 256Right-handed 310
Helix 12
AB3
A
257 268Right-handed alpha
Helix 13
AB4
A
278 291Right-handed alpha
Helix 14
AB5
A
295 310Right-handed alpha
Helix 15
AB6
A
319 326Right-handed alpha
Helix 16
AB7
B
7 11Right-handed 310
Helix 17
AB8
B
13 21Right-handed alpha
Helix 18
AB9
B
27 29Right-handed 310
Helix 19
AC1
B
57 71Right-handed alpha
Helix 20
AC2
B
99 112Right-handed alpha
Helix 21
AC3
B
145 160Right-handed alpha
Helix 22
AC4
B
173 185Right-handed alpha
Helix 23
AC5
B
205 212Right-handed alpha
Helix 24
AC6
B
230 244Right-handed alpha
Helix 25
AC7
B
254 256Right-handed 310
Helix 26
AC8
B
257 268Right-handed alpha
Helix 27
AC9
B
278 291Right-handed alpha
Helix 28
AD1
B
295 310Right-handed alpha
Helix 29
AD2
B
319 327Right-handed alpha
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There are 4 sheets in PDB entry 5HNR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
46 47first strand
Strand 2
A
53 57anti-parallel
Strand 3
A
31 38parallel
Strand 4
A
75 81parallel
Strand 5
A
116 121parallel
Strand 6
A
164 167parallel
Strand 7
A
192 193parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
46 47first strand
Strand 2
A
53 57anti-parallel
Strand 3
A
31 38parallel
Strand 4
A
314 317parallel
Strand 5
A
273 277parallel
Strand 6
A
249 252parallel
Strand 7
A
198 199parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
46 47first strand
Strand 2
B
53 56anti-parallel
Strand 3
B
31 38parallel
Strand 4
B
75 81parallel
Strand 5
B
116 121parallel
Strand 6
B
164 167parallel
Strand 7
B
192 193parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
46 47first strand
Strand 2
B
53 56anti-parallel
Strand 3
B
31 38parallel
Strand 4
B
314 317parallel
Strand 5
B
273 277parallel
Strand 6
B
249 252parallel
Strand 7
B
198 199parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il