Analysis of interatomic Contacts of Structural Units in PDB entry:
5HP1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5HP1 entry

There are 10 chains in PDB entry 5HP1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
PRO 1SER 553
B
PRO 4GLN 428
C
PRO 1SER 553
F
T -1 C 1
F
C 3 C 3
F
C 5 G 33
D
GLU 6TYR 427
E
T -1 C 1
E
C 3 C 3
E
C 5 G 33
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 65 helices in PDB entry 5HP1. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
27 45Right-handed alpha
Helix 2
AA2
A
77 84Right-handed alpha
Helix 3
AA3
A
96 100Right-handed 310
Helix 4
AA4
A
114 118Right-handed 310
Helix 5
AA5
A
122 129Right-handed 310
Helix 6
AA6
A
155 174Right-handed alpha
Helix 7
AA7
A
194 212Right-handed alpha
Helix 8
AA8
A
217 221Right-handed 310
Helix 9
AA9
A
253 268Right-handed alpha
Helix 10
AB1
A
276 284Right-handed alpha
Helix 11
AB2
A
296 312Right-handed alpha
Helix 12
AB3
A
363 384Right-handed alpha
Helix 13
AB4
A
394 405Right-handed alpha
Helix 14
AB5
A
473 488Right-handed alpha
Helix 15
AB6
A
499 508Right-handed alpha
Helix 16
AB7
A
515 528Right-handed alpha
Helix 17
AB8
A
542 552Right-handed alpha
Helix 18
AB9
B
27 44Right-handed alpha
Helix 19
AC1
B
77 84Right-handed alpha
Helix 20
AC2
B
86 91Right-handed alpha
Helix 21
AC3
B
99 103Right-handed 310
Helix 22
AC4
B
112 118Right-handed 310
Helix 23
AC5
B
124 129Right-handed 310
Helix 24
AC6
B
134 138Right-handed 310
Helix 25
AC7
B
154 175Right-handed alpha
Helix 26
AC8
B
194 216Right-handed alpha
Helix 27
AC9
B
235 239Right-handed 310
Helix 28
AD1
B
253 268Right-handed alpha
Helix 29
AD2
B
276 282Right-handed alpha
Helix 30
AD3
B
296 312Right-handed alpha
Helix 31
AD4
B
363 384Right-handed alpha
Helix 32
AD5
B
394 402Right-handed alpha
Helix 33
AD6
B
403 405Right-handed 310
Helix 34
AD7
C
27 45Right-handed alpha
Helix 35
AD8
C
77 84Right-handed alpha
Helix 36
AD9
C
96 100Right-handed 310
Helix 37
AE1
C
114 118Right-handed 310
Helix 38
AE2
C
122 129Right-handed 310
Helix 39
AE3
C
155 174Right-handed alpha
Helix 40
AE4
C
194 212Right-handed alpha
Helix 41
AE5
C
217 221Right-handed 310
Helix 42
AE6
C
253 268Right-handed alpha
Helix 43
AE7
C
276 284Right-handed alpha
Helix 44
AE8
C
296 312Right-handed alpha
Helix 45
AE9
C
363 384Right-handed alpha
Helix 46
AF1
C
394 405Right-handed alpha
Helix 47
AF2
C
473 488Right-handed alpha
Helix 48
AF3
C
499 508Right-handed alpha
Helix 49
AF4
C
515 528Right-handed alpha
Helix 50
AF5
C
544 553Right-handed alpha
Helix 51
AF6
D
27 44Right-handed alpha
Helix 52
AF7
D
77 84Right-handed alpha
Helix 53
AF8
D
99 103Right-handed 310
Helix 54
AF9
D
112 118Right-handed 310
Helix 55
AG1
D
121 126Right-handed alpha
Helix 56
AG2
D
127 129Right-handed 310
Helix 57
AG3
D
134 138Right-handed 310
Helix 58
AG4
D
154 175Right-handed alpha
Helix 59
AG5
D
194 213Right-handed alpha
Helix 60
AG6
D
235 239Right-handed 310
Helix 61
AG7
D
253 268Right-handed alpha
Helix 62
AG8
D
276 282Right-handed alpha
Helix 63
AG9
D
296 312Right-handed alpha
Helix 64
AH1
D
363 384Right-handed alpha
Helix 65
AH2
D
394 406Right-handed alpha
Back to top of page

There are 22 sheets in PDB entry 5HP1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
47 48first strand
Strand 2
A
142 146anti-parallel
Strand 3
A
130 132anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
60 64first strand
Strand 2
A
71 75anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
105 110first strand
Strand 2
A
186 191anti-parallel
Strand 3
A
179 183anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
227 229first strand
Strand 2
A
232 234anti-parallel
Strand 3
A
239 241anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
347 354first strand
Strand 2
A
337 344anti-parallel
Strand 3
A
326 331anti-parallel
Strand 4
A
388 391parallel
Strand 5
A
414 416parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
361 362first strand
Strand 2
A
512 513anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
464 470first strand
Strand 2
A
452 459anti-parallel
Strand 3
A
438 446anti-parallel
Strand 4
A
492 497parallel
Strand 5
A
530 535parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
47 49first strand
Strand 2
B
142 146anti-parallel
Strand 3
B
130 132anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
60 63first strand
Strand 2
B
72 75anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
179 183first strand
Strand 2
B
186 191anti-parallel
Strand 3
B
105 110anti-parallel
Strand 4
B
232 234anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
347 355first strand
Strand 2
B
336 344anti-parallel
Strand 3
B
326 333anti-parallel
Strand 4
B
388 392parallel
Strand 5
B
414 417parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
47 50first strand
Strand 2
C
143 146anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
60 63first strand
Strand 2
C
72 75anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
105 110first strand
Strand 2
C
186 191anti-parallel
Strand 3
C
179 183anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
227 229first strand
Strand 2
C
232 234anti-parallel
Strand 3
C
239 241anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
347 354first strand
Strand 2
C
337 344anti-parallel
Strand 3
C
326 331anti-parallel
Strand 4
C
388 391parallel
Strand 5
C
414 416parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
361 362first strand
Strand 2
C
512 513anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
464 470first strand
Strand 2
C
452 459anti-parallel
Strand 3
C
438 446anti-parallel
Strand 4
C
492 497parallel
Strand 5
C
530 535parallel
Back to list of sheets
Back to top of page

There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
47 50first strand
Strand 2
D
142 146anti-parallel
Strand 3
D
130 132anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
60 64first strand
Strand 2
D
71 75anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
179 183first strand
Strand 2
D
186 191anti-parallel
Strand 3
D
105 110anti-parallel
Strand 4
D
232 234anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
347 355first strand
Strand 2
D
336 344anti-parallel
Strand 3
D
326 333anti-parallel
Strand 4
D
388 392parallel
Strand 5
D
414 417parallel
Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il