Analysis of interatomic Contacts of Structural Units in PDB entry:
5HVM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5HVM entry

There are 2 chains in PDB entry 5HVM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 12ALA 479
B
 ALA 12ALA 479
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 5HVM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
72 81Right-handed alpha
Helix 2
AA2
A
89 98Right-handed alpha
Helix 3
AA3
A
104 110Right-handed alpha
Helix 4
AA4
A
111 116Right-handed 310
Helix 5
AA5
A
119 141Right-handed alpha
Helix 6
AA6
A
152 155Right-handed 310
Helix 7
AA7
A
156 166Right-handed alpha
Helix 8
AA8
A
184 189Right-handed alpha
Helix 9
AA9
A
193 202Right-handed alpha
Helix 10
AB1
A
211 226Right-handed alpha
Helix 11
AB2
A
252 260Right-handed alpha
Helix 12
AB3
A
262 276Right-handed alpha
Helix 13
AB4
A
289 292Right-handed 310
Helix 14
AB5
A
293 308Right-handed alpha
Helix 15
AB6
A
309 312Right-handed 310
Helix 16
AB7
A
328 350Right-handed alpha
Helix 17
AB8
A
365 376Right-handed alpha
Helix 18
AB9
A
390 398Right-handed alpha
Helix 19
AC1
A
413 418Right-handed alpha
Helix 20
AC2
A
428 442Right-handed alpha
Helix 21
AC3
A
443 461Right-handed alpha
Helix 22
AC4
A
462 479Right-handed alpha
Helix 23
AC5
B
72 81Right-handed alpha
Helix 24
AC6
B
89 98Right-handed alpha
Helix 25
AC7
B
104 109Right-handed alpha
Helix 26
AC8
B
110 111Right-handed 310
Helix 27
AC9
B
112 116Right-handed 310
Helix 28
AD1
B
119 140Right-handed alpha
Helix 29
AD2
B
152 155Right-handed 310
Helix 30
AD3
B
156 166Right-handed alpha
Helix 31
AD4
B
184 189Right-handed alpha
Helix 32
AD5
B
193 202Right-handed alpha
Helix 33
AD6
B
211 226Right-handed alpha
Helix 34
AD7
B
252 262Right-handed alpha
Helix 35
AD8
B
262 276Right-handed alpha
Helix 36
AD9
B
289 292Right-handed 310
Helix 37
AE1
B
293 308Right-handed alpha
Helix 38
AE2
B
309 312Right-handed 310
Helix 39
AE3
B
328 350Right-handed alpha
Helix 40
AE4
B
365 376Right-handed alpha
Helix 41
AE5
B
390 398Right-handed alpha
Helix 42
AE6
B
413 418Right-handed alpha
Helix 43
AE7
B
428 442Right-handed alpha
Helix 44
AE8
B
443 461Right-handed alpha
Helix 45
AE9
B
462 479Right-handed alpha
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There are 5 sheets in PDB entry 5HVM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 85first strand
Strand 2
A
56 60parallel
Strand 3
A
14 20parallel
Strand 4
A
146 150parallel
Strand 5
A
173 177parallel
Strand 6
A
206 209parallel
Strand 7
A
240 246parallel
Strand 8
A
234 237anti-parallel
Strand 9
A
230 231anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
357 360first strand
Strand 2
A
315 322parallel
Strand 3
A
280 287parallel
Strand 4
A
378 381parallel
Strand 5
A
405 409parallel
Strand 6
A
422 424parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
83 85first strand
Strand 2
B
55 60parallel
Strand 3
B
14 20parallel
Strand 4
B
146 150parallel
Strand 5
B
173 177parallel
Strand 6
B
206 209parallel
Strand 7
B
240 246parallel
Strand 8
B
234 237anti-parallel
Strand 9
B
230 231anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
26 28first strand
Strand 2
B
31 33anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
357 360first strand
Strand 2
B
315 322parallel
Strand 3
B
280 287parallel
Strand 4
B
378 381parallel
Strand 5
B
405 409parallel
Strand 6
B
422 424parallel
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