Analysis of interatomic Contacts of Structural Units in PDB entry:
5HVQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5HVQ entry

There are 2 chains in PDB entry 5HVQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
D
GLY 78ARG 294
C
GLY 9GLU 246
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 5HVQ. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
D
81 101Right-handed alpha
Helix 2
AA2
D
108 115Right-handed alpha
Helix 3
AA3
D
118 121Right-handed 310
Helix 4
AA4
D
122 137Right-handed alpha
Helix 5
AA5
D
173 190Right-handed alpha
Helix 6
AA6
D
195 203Right-handed alpha
Helix 7
AA7
D
220 227Right-handed alpha
Helix 8
AA8
D
250 258Right-handed alpha
Helix 9
AA9
D
259 270Right-handed alpha
Helix 10
AB1
D
274 277Right-handed 310
Helix 11
AB2
D
278 290Right-handed alpha
Helix 12
AB3
C
12 25Right-handed alpha
Helix 13
AB4
C
30 42Right-handed alpha
Helix 14
AB5
C
52 62Right-handed alpha
Helix 15
AB6
C
64 67Right-handed 310
Helix 16
AB7
C
94 99Right-handed alpha
Helix 17
AB8
C
102 119Right-handed alpha
Helix 18
AB9
C
126 130Right-handed alpha
Helix 19
AC1
C
131 136Right-handed 310
Helix 20
AC2
C
142 156Right-handed alpha
Helix 21
AC3
C
169 184Right-handed alpha
Helix 22
AC4
C
212 220Right-handed alpha
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There are 6 sheets in PDB entry 5HVQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
106 107first strand
Strand 2
D
151 156anti-parallel
Strand 3
D
140 144anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
193 194first strand
Strand 2
D
247 249anti-parallel
Strand 3
D
234 236anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
28 29first strand
Strand 2
C
82 88anti-parallel
Strand 3
C
69 75anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
124 125first strand
Strand 2
C
165 168anti-parallel
Strand 3
C
159 162anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
189 190first strand
Strand 2
C
197 198anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
202 203first strand
Strand 2
C
210 211anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il